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Proteomic databases

Genomes2Drugs: Identifies Target Proteins and Lead Drugs from Proteome Data

David Toomey, Heinrich C. Hoppe, Marian P. Brennan, Kevin B. Nolan, Anthony J. Chubb

published 10 Jul 2009

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A Sequence and Structure Based Method to Predict Putative Substrates, Functions and Regulatory Networks of Endo Proteases

Prasanna Venkatraman, Satish Balakrishnan, Shashidhar Rao, Yogesh Hooda, Suyog Pol

published 27 May 2009

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High-Throughput Proteomics Detection of Novel Splice Isoforms in Human Platelets

Karen A. Power, James P. McRedmond, Andreas de Stefani, William M. Gallagher, Peadar Ó Gaora

published 24 Mar 2009

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Variations in the Electrostatic Landscape of Class II Human Leukocyte Antigen Molecule Induced by Modifications in the Myelin Basic Protein Peptide: A Theoretical Approach

William A. Agudelo, Johan F. Galindo, Marysol Ortiz, José L. Villaveces, Edgar E. Daza, Manuel E. Patarroyo

published 09 Jan 2009

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Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

Joseph M. Dybas, Carlos J. Madrid-Aliste, Fa-Yun Che, Edward Nieves, Dmitry Rykunov, Ruth Hogue Angeletti, Louis M. Weiss, Kami Kim, Andras Fiser

published 09 Dec 2008

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Proteomic Analysis of Ovarian Cancer Cells Reveals Dynamic Processes of Protein Secretion and Shedding of Extra-Cellular Domains

Vitor M. Faça, Aviva P. Ventura, Mathew P. Fitzgibbon, Sandra R. Pereira-Faça, Sharon J. Pitteri, Ann E. Green, Renee C. Ireton, Qing Zhang, Hong Wang, Kathy C. O'Briant, Charles W. Drescher, Michèl Schummer, Martin W. McIntosh, Beatrice S. Knudsen, Samir M. Hanash

published 18 Jun 2008

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Dual Targeted Mitochondrial Proteins Are Characterized by Lower MTS Parameters and Total Net Charge

Maya Dinur-Mills, Merav Tal, Ophry Pines

published 14 May 2008

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De-Orphaning the Structural Proteome through Reciprocal Comparison of Evolutionarily Important Structural Features

R. Matthew Ward, Serkan Erdin, Tuan A. Tran, David M. Kristensen, Andreas Martin Lisewski, Olivier Lichtarge

published 07 May 2008

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Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome

Boris Zybailov, Heidi Rutschow, Giulia Friso, Andrea Rudella, Olof Emanuelsson, Qi Sun, Klaas J. van Wijk

published 23 Apr 2008

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Nature of Protein Family Signatures: Insights from Singular Value Analysis of Position-Specific Scoring Matrices

Akira R. Kinjo, Haruki Nakamura

published 09 Apr 2008

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Estimation of Relevant Variables on High-Dimensional Biological Patterns Using Iterated Weighted Kernel Functions

Sergio Rojas-Galeano, Emily Hsieh, Dan Agranoff, Sanjeev Krishna, Delmiro Fernandez-Reyes

published 26 Mar 2008

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Hsf1 Activation Inhibits Rapamycin Resistance and TOR Signaling in Yeast Revealed by Combined Proteomic and Genetic Analysis

Sricharan Bandhakavi, Hongwei Xie, Brennon O'Callaghan, Hiroshi Sakurai, Do-Hyung Kim, Timothy J. Griffin

published 13 Feb 2008

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Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

Stephen J. Callister, Lee Ann McCue, Joshua E. Turse, Matthew E. Monroe, Kenneth J. Auberry, Richard D. Smith, Joshua N. Adkins, Mary S. Lipton

published 06 Feb 2008

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