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Proteomic databases

Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches

Fumio Matsuda, Yoko Shinbo, Akira Oikawa, Masami Yokota Hirai, Oliver Fiehn, Shigehiko Kanaya, Kazuki Saito

published 16 Oct 2009

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Empirical Bayes Analysis of Quantitative Proteomics Experiments

Adam A. Margolin, Shao-En Ong, Monica Schenone, Robert Gould, Stuart L. Schreiber, Steven A. Carr, Todd R. Golub

published 14 Oct 2009

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Systems Integration of Biodefense Omics Data for Analysis of Pathogen-Host Interactions and Identification of Potential Targets

Peter B. McGarvey, Hongzhan Huang, Raja Mazumder, Jian Zhang, Yongxing Chen, Chengdong Zhang, Stephen Cammer, Rebecca Will, Margie Odle, Bruno Sobral, Margaret Moore, Cathy H. Wu

published 25 Sep 2009

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Proteomic Interrogation of Androgen Action in Prostate Cancer Cells Reveals Roles of Aminoacyl tRNA Synthetases

Adaikkalam Vellaichamy, Arun Sreekumar, John R. Strahler, Theckelnaycke Rajendiran, Jindan Yu, Sooryanarayana Varambally, Yong Li, Gilbert S. Omenn, Arul M. Chinnaiyan, Alexey I. Nesvizhskii

published 18 Sep 2009

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Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only

Jiangning Song, Hao Tan, Khalid Mahmood, Ruby H. P. Law, Ashley M. Buckle, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock

published 17 Sep 2009

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Maximum Entropy Reconstructions of Dynamic Signaling Networks from Quantitative Proteomics Data

Jason W. Locasale, Alejandro Wolf-Yadlin

published 26 Aug 2009

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Coupling between Properties of the Protein Shape and the Rate of Protein Folding

Dmitry N. Ivankov, Natalya S. Bogatyreva, Michail Yu Lobanov, Oxana V. Galzitskaya

published 03 Aug 2009

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Genomes2Drugs: Identifies Target Proteins and Lead Drugs from Proteome Data

David Toomey, Heinrich C. Hoppe, Marian P. Brennan, Kevin B. Nolan, Anthony J. Chubb

published 10 Jul 2009

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A Sequence and Structure Based Method to Predict Putative Substrates, Functions and Regulatory Networks of Endo Proteases

Prasanna Venkatraman, Satish Balakrishnan, Shashidhar Rao, Yogesh Hooda, Suyog Pol

published 27 May 2009

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High-Throughput Proteomics Detection of Novel Splice Isoforms in Human Platelets

Karen A. Power, James P. McRedmond, Andreas de Stefani, William M. Gallagher, Peadar Ó Gaora

published 24 Mar 2009

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Variations in the Electrostatic Landscape of Class II Human Leukocyte Antigen Molecule Induced by Modifications in the Myelin Basic Protein Peptide: A Theoretical Approach

William A. Agudelo, Johan F. Galindo, Marysol Ortiz, José L. Villaveces, Edgar E. Daza, Manuel E. Patarroyo

published 09 Jan 2009

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Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

Joseph M. Dybas, Carlos J. Madrid-Aliste, Fa-Yun Che, Edward Nieves, Dmitry Rykunov, Ruth Hogue Angeletti, Louis M. Weiss, Kami Kim, Andras Fiser

published 09 Dec 2008

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Proteomic Analysis of Ovarian Cancer Cells Reveals Dynamic Processes of Protein Secretion and Shedding of Extra-Cellular Domains

Vitor M. Faça, Aviva P. Ventura, Mathew P. Fitzgibbon, Sandra R. Pereira-Faça, Sharon J. Pitteri, Ann E. Green, Renee C. Ireton, Qing Zhang, Hong Wang, Kathy C. O'Briant, Charles W. Drescher, Michèl Schummer, Martin W. McIntosh, Beatrice S. Knudsen, Samir M. Hanash

published 18 Jun 2008

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