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Proteomic databases

Composite Structural Motifs of Binding Sites for Delineating Biological Functions of Proteins

Akira R. Kinjo, Haruki Nakamura

published 08 Feb 2012

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TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences

Jiangning Song, Hao Tan, Mingjun Wang, Geoffrey I. Webb, Tatsuya Akutsu

published 02 Feb 2012

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Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype

Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, Leo Izzi, Giovanni Camussi, Marco Forni

published 16 Dec 2011

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Active Site Detection by Spatial Conformity and Electrostatic Analysis—Unravelling a Proteolytic Function in Shrimp Alkaline Phosphatase

Sandeep Chakraborty, Renu Minda, Lipika Salaye, Swapan K. Bhattacharjee, Basuthkar J. Rao

published 08 Dec 2011

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Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

Brandi L. Cantarel, Alison R. Erickson, Nathan C. VerBerkmoes, Brian K. Erickson, Patricia A. Carey, Chongle Pan, Manesh Shah, Emmanuel F. Mongodin, Janet K. Jansson, Claire M. Fraser-Liggett, Robert L. Hettich

published 23 Nov 2011

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A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface

Xiaoxiao Li, James LeBlanc, Allison Truong, Ravi Vuthoori, Sharon S. Chen, Jonathan L. Lustgarten, Bennett Roth, Jeff Allard, Andrew Ippoliti, Laura L. Presley, James Borneman, William L. Bigbee, Vanathi Gopalakrishnan, Thomas G. Graeber, David Elashoff, Jonathan Braun, Lee Goodglick

published 21 Nov 2011

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Proteogenomic Analysis of Bacteria and Archaea: A 46 Organism Case Study

Eli Venter, Richard D. Smith, Samuel H. Payne

published 17 Nov 2011

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Disordered Patterns in Clustered Protein Data Bank and in Eukaryotic and Bacterial Proteomes

Michail Yu. Lobanov, Oxana V. Galzitskaya

published 04 Nov 2011

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Minimal Functional Sites Allow a Classification of Zinc Sites in Proteins

Claudia Andreini, Ivano Bertini, Gabriele Cavallaro

published 17 Oct 2011

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Examination of Triacylglycerol Biosynthetic Pathways via De Novo Transcriptomic and Proteomic Analyses in an Unsequenced Microalga

Michael T. Guarnieri, Ambarish Nag, Sharon L. Smolinski, Al Darzins, Michael Seibert, Philip T. Pienkos

published 17 Oct 2011

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Chronic Morphine Alters the Presynaptic Protein Profile: Identification of Novel Molecular Targets Using Proteomics and Network Analysis

Noura S. Abul-Husn, Suresh P. Annangudi, Avi Ma'ayan, Dinah L. Ramos-Ortolaza, Steven D. Stockton Jr., Ivone Gomes, Jonathan V. Sweedler, Lakshmi A. Devi

published 17 Oct 2011

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DomPep—A General Method for Predicting Modular Domain-Mediated Protein-Protein Interactions

Lei Li, Bing Zhao, Jun Du, Kaizhong Zhang, Charles X. Ling, Shawn Shun-Cheng Li

published 07 Oct 2011

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A Reference Proteomic Database of Lactobacillus plantarum CMCC-P0002

Li Zhu, Wei Hu, Datao Liu, Wanhong Tian, Gang Yu, Xiankai Liu, Jie Wang, Erling Feng, Xuemin Zhang, Bei Chen, Ming Zeng, Hengliang Wang

published 05 Oct 2011

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