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Proteomic databases

Predicting Protein Folds with Fold-Specific PSSM Libraries

Yoojin Hong, Sree Vamsee Chintapalli, Kyung Dae Ko, Gaurav Bhardwaj, Zhenhai Zhang, Damian van Rossum, Randen L. Patterson

published 16 Jun 2011

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The Effect of Using an Inappropriate Protein Database for Proteomic Data Analysis

Giselle M. Knudsen, Robert J. Chalkley

published 14 Jun 2011

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Solution Structures of the Acyl Carrier Protein Domain from the Highly Reducing Type I Iterative Polyketide Synthase CalE8

Jackwee Lim, Rong Kong, Elavazhagan Murugan, Chun Loong Ho, Zhao-Xun Liang, Daiwen Yang

published 02 Jun 2011

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Structure Collisions between Interacting Proteins

Dorothea Emig, Oliver Sander, Gabriele Mayr, Mario Albrecht

published 02 Jun 2011

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Identification of Antifreeze Proteins and Their Functional Residues by Support Vector Machine and Genetic Algorithms based on n-Peptide Compositions

Chin-Sheng Yu, Chih-Hao Lu

published 31 May 2011

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High Abundance Proteins Depletion vs Low Abundance Proteins Enrichment: Comparison of Methods to Reduce the Plasma Proteome Complexity

Renato Millioni, Serena Tolin, Lucia Puricelli, Stefano Sbrignadello, Gian Paolo Fadini, Paolo Tessari, Giorgio Arrigoni

published 04 May 2011

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A Mighty Small Heart: The Cardiac Proteome of Adult Drosophila melanogaster

Anthony Cammarato, Christian H. Ahrens, Nakissa N. Alayari, Ermir Qeli, Jasma Rucker, Mary C. Reedy, Christian M. Zmasek, Marjan Gucek, Robert N. Cole, Jennifer E. Van Eyk, Rolf Bodmer, Brian O'Rourke, Sanford I. Bernstein, D. Brian Foster

published 25 Apr 2011

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Genomic and Proteomic Analysis of the Impact of Mitotic Quiescence on the Engraftment of Human CD34⁺ Cells

Brahmananda Reddy Chitteti, Yunlong Liu, Edward F. Srour

published 07 Mar 2011

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Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142

Jana Stöckel, Jon M. Jacobs, Thanura R. Elvitigala, Michelle Liberton, Eric A. Welsh, Ashoka D. Polpitiya, Marina A. Gritsenko, Carrie D. Nicora, David W. Koppenaal, Richard D. Smith, Himadri B. Pakrasi

published 22 Feb 2011

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Identification of Clinically Relevant Protein Targets in Prostate Cancer with 2D-DIGE Coupled Mass Spectrometry and Systems Biology Network Platform

Ramesh Ummanni, Frederike Mundt, Heike Pospisil, Simone Venz, Christian Scharf, Christine Barett, Maria Fälth, Jens Köllermann, Reinhard Walther, Thorsten Schlomm, Guido Sauter, Carsten Bokemeyer, Holger Sültmann, A. Schuppert, Tim H. Brümmendorf, Stefan Balabanov

published 11 Feb 2011

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Na⁺/K⁺-ATPase α1 Identified as an Abundant Protein in the Blood-Labyrinth Barrier That Plays an Essential Role in the Barrier Integrity

Yue Yang, Min Dai, Teresa M. Wilson, Irina Omelchenko, John E. Klimek, Phillip A. Wilmarth, Larry L. David, Alfred L. Nuttall, Peter G. Gillespie, Xiaorui Shi

published 31 Jan 2011

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Variance Component Analysis of a Multi-Site Study for the Reproducibility of Multiple Reaction Monitoring Measurements of Peptides in Human Plasma

Jessie Q. Xia, Nell Sedransk, Xingdong Feng

published 26 Jan 2011

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RAId_aPS: MS/MS Analysis with Multiple Scoring Functions and Spectrum-Specific Statistics

Gelio Alves, Aleksey Y. Ogurtsov, Yi-Kuo Yu

published 16 Nov 2010

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