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Proteomic databases

Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

Brandi L. Cantarel, Alison R. Erickson, Nathan C. VerBerkmoes, Brian K. Erickson, Patricia A. Carey, Chongle Pan, Manesh Shah, Emmanuel F. Mongodin, Janet K. Jansson, Claire M. Fraser-Liggett, Robert L. Hettich

published 23 Nov 2011

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A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface

Xiaoxiao Li, James LeBlanc, Allison Truong, Ravi Vuthoori, Sharon S. Chen, Jonathan L. Lustgarten, Bennett Roth, Jeff Allard, Andrew Ippoliti, Laura L. Presley, James Borneman, William L. Bigbee, Vanathi Gopalakrishnan, Thomas G. Graeber, David Elashoff, Jonathan Braun, Lee Goodglick

published 21 Nov 2011

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Proteogenomic Analysis of Bacteria and Archaea: A 46 Organism Case Study

Eli Venter, Richard D. Smith, Samuel H. Payne

published 17 Nov 2011

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Disordered Patterns in Clustered Protein Data Bank and in Eukaryotic and Bacterial Proteomes

Michail Yu. Lobanov, Oxana V. Galzitskaya

published 04 Nov 2011

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Minimal Functional Sites Allow a Classification of Zinc Sites in Proteins

Claudia Andreini, Ivano Bertini, Gabriele Cavallaro

published 17 Oct 2011

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Examination of Triacylglycerol Biosynthetic Pathways via De Novo Transcriptomic and Proteomic Analyses in an Unsequenced Microalga

Michael T. Guarnieri, Ambarish Nag, Sharon L. Smolinski, Al Darzins, Michael Seibert, Philip T. Pienkos

published 17 Oct 2011

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Chronic Morphine Alters the Presynaptic Protein Profile: Identification of Novel Molecular Targets Using Proteomics and Network Analysis

Noura S. Abul-Husn, Suresh P. Annangudi, Avi Ma'ayan, Dinah L. Ramos-Ortolaza, Steven D. Stockton Jr., Ivone Gomes, Jonathan V. Sweedler, Lakshmi A. Devi

published 17 Oct 2011

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DomPep—A General Method for Predicting Modular Domain-Mediated Protein-Protein Interactions

Lei Li, Bing Zhao, Jun Du, Kaizhong Zhang, Charles X. Ling, Shawn Shun-Cheng Li

published 07 Oct 2011

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A Reference Proteomic Database of Lactobacillus plantarum CMCC-P0002

Li Zhu, Wei Hu, Datao Liu, Wanhong Tian, Gang Yu, Xiankai Liu, Jie Wang, Erling Feng, Xuemin Zhang, Bei Chen, Ming Zeng, Hengliang Wang

published 05 Oct 2011

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A Comparison of Methods for Classifying Clinical Samples Based on Proteomics Data: A Case Study for Statistical and Machine Learning Approaches

Dayle L. Sampson, Tony J. Parker, Zee Upton, Cameron P. Hurst

published 28 Sep 2011

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Protein X of Hepatitis B Virus: Origin and Structure Similarity with the Central Domain of DNA Glycosylase

Formijn J. van Hemert, Maarten A. A. van de Klundert, Vladimir V. Lukashov, Neeltje A. Kootstra, Ben Berkhout, Hans L. Zaaijer

published 05 Aug 2011

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Proteomic Biomarkers for Acute Interstitial Lung Disease in Gefitinib-Treated Japanese Lung Cancer Patients

Fredrik Nyberg, Atsushi Ogiwara, Chris G. Harbron, Takao Kawakami, Keiko Nagasaka, Sachiko Takami, Kazuya Wada, Hsiao-Kun Tu, Makiko Otsuji, Yutaka Kyono, Tae Dobashi, Yasuhiko Komatsu, Makoto Kihara, Shingo Akimoto, Ian S. Peers, Marie C. South, Tim Higenbottam, Masahiro Fukuoka, Koichiro Nakata, Yuichiro Ohe, Shoji Kudoh, Ib Groth Clausen, Toshihide Nishimura, György Marko-Varga, Harubumi Kato

published 20 Jul 2011

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Characterization of Serum Proteins Associated with IL28B Genotype among Patients with Chronic Hepatitis C

Derek D. Cyr, Joseph E. Lucas, J. Will Thompson, Keyur Patel, Paul J. Clark, Alexander Thompson, Hans L. Tillmann, John G. McHutchison, M. Arthur Moseley, Jeanette J. McCarthy

published 05 Jul 2011

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