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Proteomic databases

Prediction of Metal Ion–Binding Sites in Proteins Using the Fragment Transformation Method

Chih-Hao Lu, Yu-Feng Lin, Jau-Ji Lin, Chin-Sheng Yu

published 18 Jun 2012

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Protein-Protein Interaction Site Predictions with Three-Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces

Ching-Tai Chen, Hung-Pin Peng, Jhih-Wei Jian, Keng-Chang Tsai, Jeng-Yih Chang, Ei-Wen Yang, Jun-Bo Chen, Shinn-Ying Ho, Wen-Lian Hsu, An-Suei Yang

published 06 Jun 2012

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Extent of Structural Asymmetry in Homodimeric Proteins: Prevalence and Relevance

Lakshmipuram Seshadri Swapna, Kuchi Srikeerthana, Narayanaswamy Srinivasan

published 22 May 2012

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Comparative SILAC Proteomic Analysis of Trypanosoma brucei Bloodstream and Procyclic Lifecycle Stages

Michael D. Urbaniak, M. Lucia S Guther, Michael A. J. Ferguson

published 04 May 2012

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Computational Comparative Study of Tuberculosis Proteomes Using a Model Learned from Signal Peptide Structures

Jhih-Siang Lai, Cheng-Wei Cheng, Ting-Yi Sung, Wen-Lian Hsu

published 09 Apr 2012

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Network Analysis of Epidermal Growth Factor Signaling Using Integrated Genomic, Proteomic and Phosphorylation Data

Katrina M. Waters, Tao Liu, Ryan D. Quesenberry, Alan R. Willse, Somnath Bandyopadhyay, Loel E. Kathmann, Thomas J. Weber, Richard D. Smith, H. Steven Wiley, Brian D. Thrall

published 29 Mar 2012

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Proteomic Profiling and Protein Identification by MALDI-TOF Mass Spectrometry in Unsequenced Parasitic Nematodes

Paul Millares, E. James LaCourse, Samirah Perally, Deborah A. Ward, Mark C. Prescott, Jane E. Hodgkinson, Peter M. Brophy, Huw H. Rees

published 29 Mar 2012

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On Docking, Scoring and Assessing Protein-DNA Complexes in a Rigid-Body Framework

Marc Parisien, Karl F. Freed, Tobin R. Sosnick

published 29 Feb 2012

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Text Mining Improves Prediction of Protein Functional Sites

Karin M. Verspoor, Judith D. Cohn, Komandur E. Ravikumar, Michael E. Wall

published 29 Feb 2012

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Optimal Use of Conservation and Accessibility Filters in MicroRNA Target Prediction

Ray M. Marín, Jiří Vaníček

published 27 Feb 2012

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A Measure of the Promiscuity of Proteins and Characteristics of Residues in the Vicinity of the Catalytic Site That Regulate Promiscuity

Sandeep Chakraborty, Basuthkar J. Rao

published 16 Feb 2012

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Deciphering the Preference and Predicting the Viability of Circular Permutations in Proteins

Wei-Cheng Lo, Tian Dai, Yen-Yi Liu, Li-Fen Wang, Jenn-Kang Hwang, Ping-Chiang Lyu

published 16 Feb 2012

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Transcriptomic Analysis of Toxoplasma Development Reveals Many Novel Functions and Structures Specific to Sporozoites and Oocysts

Heather M. Fritz, Kerry R. Buchholz, Xiucui Chen, Blythe Durbin-Johnson, David M. Rocke, Patricia A. Conrad, John C. Boothroyd

published 13 Feb 2012

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