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Proteomic databases

Computational Comparative Study of Tuberculosis Proteomes Using a Model Learned from Signal Peptide Structures

Jhih-Siang Lai, Cheng-Wei Cheng, Ting-Yi Sung, Wen-Lian Hsu

published 09 Apr 2012

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Network Analysis of Epidermal Growth Factor Signaling Using Integrated Genomic, Proteomic and Phosphorylation Data

Katrina M. Waters, Tao Liu, Ryan D. Quesenberry, Alan R. Willse, Somnath Bandyopadhyay, Loel E. Kathmann, Thomas J. Weber, Richard D. Smith, H. Steven Wiley, Brian D. Thrall

published 29 Mar 2012

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Proteomic Profiling and Protein Identification by MALDI-TOF Mass Spectrometry in Unsequenced Parasitic Nematodes

Paul Millares, E. James LaCourse, Samirah Perally, Deborah A. Ward, Mark C. Prescott, Jane E. Hodgkinson, Peter M. Brophy, Huw H. Rees

published 29 Mar 2012

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On Docking, Scoring and Assessing Protein-DNA Complexes in a Rigid-Body Framework

Marc Parisien, Karl F. Freed, Tobin R. Sosnick

published 29 Feb 2012

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Text Mining Improves Prediction of Protein Functional Sites

Karin M. Verspoor, Judith D. Cohn, Komandur E. Ravikumar, Michael E. Wall

published 29 Feb 2012

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Optimal Use of Conservation and Accessibility Filters in MicroRNA Target Prediction

Ray M. Marín, Jiří Vaníček

published 27 Feb 2012

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A Measure of the Promiscuity of Proteins and Characteristics of Residues in the Vicinity of the Catalytic Site That Regulate Promiscuity

Sandeep Chakraborty, Basuthkar J. Rao

published 16 Feb 2012

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Deciphering the Preference and Predicting the Viability of Circular Permutations in Proteins

Wei-Cheng Lo, Tian Dai, Yen-Yi Liu, Li-Fen Wang, Jenn-Kang Hwang, Ping-Chiang Lyu

published 16 Feb 2012

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Transcriptomic Analysis of Toxoplasma Development Reveals Many Novel Functions and Structures Specific to Sporozoites and Oocysts

Heather M. Fritz, Kerry R. Buchholz, Xiucui Chen, Blythe Durbin-Johnson, David M. Rocke, Patricia A. Conrad, John C. Boothroyd

published 13 Feb 2012

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Composite Structural Motifs of Binding Sites for Delineating Biological Functions of Proteins

Akira R. Kinjo, Haruki Nakamura

published 08 Feb 2012

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TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences

Jiangning Song, Hao Tan, Mingjun Wang, Geoffrey I. Webb, Tatsuya Akutsu

published 02 Feb 2012

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Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype

Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, Leo Izzi, Giovanni Camussi, Marco Forni

published 16 Dec 2011

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Active Site Detection by Spatial Conformity and Electrostatic Analysis—Unravelling a Proteolytic Function in Shrimp Alkaline Phosphatase

Sandeep Chakraborty, Renu Minda, Lipika Salaye, Swapan K. Bhattacharjee, Basuthkar J. Rao

published 08 Dec 2011

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