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Proteomic databases

Computational Comparative Study of Tuberculosis Proteomes Using a Model Learned from Signal Peptide Structures

Jhih-Siang Lai, Cheng-Wei Cheng, Ting-Yi Sung, Wen-Lian Hsu

Network Analysis of Epidermal Growth Factor Signaling Using Integrated Genomic, Proteomic and Phosphorylation Data

Katrina M. Waters, Tao Liu, [ ... ], Brian D. Thrall

Proteomic Profiling and Protein Identification by MALDI-TOF Mass Spectrometry in Unsequenced Parasitic Nematodes

Paul Millares, E. James LaCourse, [ ... ], Huw H. Rees

On Docking, Scoring and Assessing Protein-DNA Complexes in a Rigid-Body Framework

Marc Parisien, Karl F. Freed, Tobin R. Sosnick

Text Mining Improves Prediction of Protein Functional Sites

Karin M. Verspoor, Judith D. Cohn, Komandur E. Ravikumar, Michael E. Wall

Optimal Use of Conservation and Accessibility Filters in MicroRNA Target Prediction

Ray M. Marín, Jiří Vaníček

A Measure of the Promiscuity of Proteins and Characteristics of Residues in the Vicinity of the Catalytic Site That Regulate Promiscuity

Sandeep Chakraborty, Basuthkar J. Rao

Deciphering the Preference and Predicting the Viability of Circular Permutations in Proteins

Wei-Cheng Lo, Tian Dai, [ ... ], Ping-Chiang Lyu

Transcriptomic Analysis of Toxoplasma Development Reveals Many Novel Functions and Structures Specific to Sporozoites and Oocysts

Heather M. Fritz, Kerry R. Buchholz, [ ... ], John C. Boothroyd

Composite Structural Motifs of Binding Sites for Delineating Biological Functions of Proteins

Akira R. Kinjo, Haruki Nakamura

TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences

Jiangning Song, Hao Tan, [ ... ], Tatsuya Akutsu

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype

Cristina Zanini, Stefania Bruno, [ ... ], Marco Forni

Active Site Detection by Spatial Conformity and Electrostatic Analysis—Unravelling a Proteolytic Function in Shrimp Alkaline Phosphatase

Sandeep Chakraborty, Renu Minda, [ ... ], Basuthkar J. Rao

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