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Proteomic databases

Analysis of Conformational Variation in Macromolecular Structural Models

Sandeep Kumar Srivastava, Savitha Gayathri, Babu A. Manjasetty, Balasubramanian Gopal

An Improvement of Shotgun Proteomics Analysis by Adding Next-Generation Sequencing Transcriptome Data in Orange

Jiaping Song, Renjie Sun, [ ... ], Yong Zhang

Prediction of Metal Ion–Binding Sites in Proteins Using the Fragment Transformation Method

Chih-Hao Lu, Yu-Feng Lin, Jau-Ji Lin, Chin-Sheng Yu

Protein-Protein Interaction Site Predictions with Three-Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces

Ching-Tai Chen, Hung-Pin Peng, [ ... ], An-Suei Yang

Extent of Structural Asymmetry in Homodimeric Proteins: Prevalence and Relevance

Lakshmipuram Seshadri Swapna, Kuchi Srikeerthana, Narayanaswamy Srinivasan

Comparative SILAC Proteomic Analysis of Trypanosoma brucei Bloodstream and Procyclic Lifecycle Stages

Michael D. Urbaniak, M. Lucia S Guther, Michael A. J. Ferguson

Computational Comparative Study of Tuberculosis Proteomes Using a Model Learned from Signal Peptide Structures

Jhih-Siang Lai, Cheng-Wei Cheng, Ting-Yi Sung, Wen-Lian Hsu

Network Analysis of Epidermal Growth Factor Signaling Using Integrated Genomic, Proteomic and Phosphorylation Data

Katrina M. Waters, Tao Liu, [ ... ], Brian D. Thrall

Proteomic Profiling and Protein Identification by MALDI-TOF Mass Spectrometry in Unsequenced Parasitic Nematodes

Paul Millares, E. James LaCourse, [ ... ], Huw H. Rees

On Docking, Scoring and Assessing Protein-DNA Complexes in a Rigid-Body Framework

Marc Parisien, Karl F. Freed, Tobin R. Sosnick

Text Mining Improves Prediction of Protein Functional Sites

Karin M. Verspoor, Judith D. Cohn, Komandur E. Ravikumar, Michael E. Wall

Optimal Use of Conservation and Accessibility Filters in MicroRNA Target Prediction

Ray M. Marín, Jiří Vaníček

A Measure of the Promiscuity of Proteins and Characteristics of Residues in the Vicinity of the Catalytic Site That Regulate Promiscuity

Sandeep Chakraborty, Basuthkar J. Rao

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