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Proteomic databases

TRIP Database 2.0: A Manually Curated Information Hub for Accessing TRP Channel Interaction Network

Young-Cheul Shin, Soo-Yong Shin, Jung Nyeo Chun, Hyeon Sung Cho, Jin Muk Lim, Hong-Gee Kim, Insuk So, Dongseop Kwon, Ju-Hong Jeon

published 11 Oct 2012

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Can the Energy Gap in the Protein-Ligand Binding Energy Landscape Be Used as a Descriptor in Virtual Ligand Screening?

Arsen V. Grigoryan, Hong Wang, Timothy J. Cardozo

published 10 Oct 2012

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The Temperature Dependent Proteomic Analysis of Thermotoga maritima

Zhuowei Wang, Wei Tong, Quanhui Wang, Xue Bai, Zhen Chen, Jingjing Zhao, Ningzhi Xu, Siqi Liu

published 05 Oct 2012

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GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

Evan Maxwell, Yan Tan, Yuxiang Tan, Han Hu, Gary Benson, Konstantin Aizikov, Shannon Conley, Gregory O. Staples, Gordon W. Slysz, Richard D. Smith, Joseph Zaia

published 26 Sep 2012

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An FD-LC-MS/MS Proteomic Strategy for Revealing Cellular Protein Networks: A Conditional Superoxide Dismutase 1 Knockout Cells

Tomoko Ichibangase, Yasuhiro Sugawara, Akio Yamabe, Akiyo Koshiyama, Akari Yoshimura, Takemi Enomoto, Kazuhiro Imai

published 18 Sep 2012

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Conic Sampling: An Efficient Method for Solving Linear and Quadratic Programming by Randomly Linking Constraints within the Interior

Oliver Serang

published 27 Aug 2012

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The Protein Architecture of Human Secretory Vesicles Reveals Differential Regulation of Signaling Molecule Secretion by Protein Kinases

Steven J. Bark, Jill Wegrzyn, Laurent Taupenot, Michael Ziegler, Daniel T. O'Connor, Qi Ma, Michael Smoot, Trey Ideker, Vivian Hook

published 16 Aug 2012

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Mathematical Modelling of the MAP Kinase Pathway Using Proteomic Datasets

Tianhai Tian, Jiangning Song

published 08 Aug 2012

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The “CPC Clip Motif”: A Conserved Structural Signature for Heparin-Binding Proteins

Marc Torrent, M. Victòria Nogués, David Andreu, Ester Boix

published 06 Aug 2012

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Comparative Transcriptional Analysis of Clinically Relevant Heat Stress Response in Clostridium difficile Strain 630

Nigel G. Ternan, Shailesh Jain, Malay Srivastava, Geoff McMullan

published 30 Jul 2012

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Medulloblastoma Exosome Proteomics Yield Functional Roles for Extracellular Vesicles

Laura M. Epple, Steve G. Griffiths, Anjelika M. Dechkovskaia, Nathaniel L. Dusto, Jason White, Rodney J. Ouellette, Thomas J. Anchordoquy, Lynne T. Bemis, Michael W. Graner

published 27 Jul 2012

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Amniotic Fluid Cathelicidin in PPROM Pregnancies: From Proteomic Discovery to Assessing Its Potential in Inflammatory Complications Diagnosis

Vojtech Tambor, Marian Kacerovsky, Ctirad Andrys, Ivana Musilova, Helena Hornychova, Lenka Pliskova, Marek Link, Jiri Stulik, Juraj Lenco

published 18 Jul 2012

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An Automated Flow for Directed Evolution Based on Detection of Promiscuous Scaffolds Using Spatial and Electrostatic Properties of Catalytic Residues

Sandeep Chakraborty

published 11 Jul 2012

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