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Proteomic databases

BioAssemblyModeler (BAM): User-Friendly Homology Modeling of Protein Homo- and Heterooligomers

Maxim V. Shapovalov, Qiang Wang, Qifang Xu, Mark Andrake, Roland L. Dunbrack Jr

published 12 Jun 2014

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Evaluation of Global Differential Gene and Protein Expression in Primary Pterygium: S100A8 and S100A9 as Possible Drivers of a Signaling Network

Aihua Hou, Wanwen Lan, Kai Pong Law, Ser Chin Jasmine Khoo, Min Qi Tin, Yoon Pin Lim, Louis Tong

published 13 May 2014

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Assessment of Metabolomic and Proteomic Biomarkers in Detection and Prognosis of Progression of Renal Function in Chronic Kidney Disease

Esther Nkuipou-Kenfack, Flore Duranton, Nathalie Gayrard, Àngel Argilés, Ulrika Lundin, Klaus M. Weinberger, Mohammed Dakna, Christian Delles, William Mullen, Holger Husi, Julie Klein, Thomas Koeck, Petra Zürbig, Harald Mischak

published 09 May 2014

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Structural Basis for the Site-Specific Incorporation of Lysine Derivatives into Proteins

Veronika Flügel, Milan Vrabel, Sabine Schneider

published 23 Apr 2014

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Automated Protein Turnover Calculations from ¹⁵N Partial Metabolic Labeling LC/MS Shotgun Proteomics Data

David Lyon, Maria Angeles Castillejo, Christiana Staudinger, Wolfram Weckwerth, Stefanie Wienkoop, Volker Egelhofer

published 15 Apr 2014

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New Insights into Dehalococcoides mccartyi Metabolism from a Reconstructed Metabolic Network-Based Systems-Level Analysis of D. mccartyi Transcriptomes

M. Ahsanul Islam, Alison S. Waller, Laura A. Hug, Nicholas J. Provart, Elizabeth A. Edwards, Radhakrishnan Mahadevan

published 14 Apr 2014

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Intermolecular β-Strand Networks Avoid Hub Residues and Favor Low Interconnectedness: A Potential Protection Mechanism against Chain Dissociation upon Mutation

Giovanni Feverati, Mounia Achoch, Laurent Vuillon, Claire Lesieur

published 14 Apr 2014

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Analysis of Expressed Genes of the Bacterium ‘Candidatus Phytoplasma Mali’ Highlights Key Features of Virulence and Metabolism

Christin Siewert, Toni Luge, Bojan Duduk, Erich Seemüller, Carmen Büttner, Sascha Sauer, Michael Kube

published 11 Apr 2014

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The Probabilistic Convolution Tree: Efficient Exact Bayesian Inference for Faster LC-MS/MS Protein Inference

Oliver Serang

published 13 Mar 2014

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Detection of Viral Proteins in Human Cells Lines by Xeno-Proteomics: Elimination of the Last Valid Excuse for Not Testing Every Cellular Proteome Dataset for Viral Proteins

Alexey L. Chernobrovkin, Roman A. Zubarev

published 11 Mar 2014

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Global Genome Response of Escherichia coli O157∶H7 Sakai during Dynamic Changes in Growth Kinetics Induced by an Abrupt Downshift in Water Activity

Chawalit Kocharunchitt, Thea King, Kari Gobius, John P. Bowman, Tom Ross

published 03 Mar 2014

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Escherichia coli Response to Uranyl Exposure at Low pH and Associated Protein Regulations

Arbia Khemiri, Marie Carrière, Nicolas Bremond, Mohamed Amine Ben Mlouka, Laurent Coquet, Isabelle Llorens, Virginie Chapon, Thierry Jouenne, Pascal Cosette, Catherine Berthomieu

published 26 Feb 2014

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The Core Proteome and Pan Proteome of Salmonella Paratyphi A Epidemic Strains

Li Zhang, Di Xiao, Bo Pang, Qian Zhang, Haijian Zhou, Lijuan Zhang, Jianzhong Zhang, Biao Kan

published 24 Feb 2014

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