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Proteomic databases

Knowledge-based prediction of protein backbone conformation using a structural alphabet

Iyanar Vetrivel, Swapnil Mahajan, Manoj Tyagi, Lionel Hoffmann, Yves-Henri Sanejouand, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Frédéric Cadet, Bernard Offmann

published 21 Nov 2017

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Estimation of the proteomic cancer co-expression sub networks by using association estimators

Cihat Erdoğan, Zeyneb Kurt, Banu Diri

published 16 Nov 2017

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A combined transcriptome and proteome analysis extends the allergome of house dust mite Dermatophagoides species

Véronique Bordas-Le Floch, Maxime Le Mignon, Laetitia Bussières, Karine Jain, Armelle Martelet, Véronique Baron-Bodo, Emmanuel Nony, Laurent Mascarell, Philippe Moingeon

published 05 Oct 2017

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Urinary Proteomics in Predicting Heart Transplantation Outcomes (uPROPHET)—Rationale and database description

Qi-Fang Huang, Sander Trenson, Zhen-Yu Zhang, Wen-Yi Yang, Lucas Van Aelst, Esther Nkuipou-Kenfack, Fang-Fei Wei, Blerim Mujaj, Lutgarde Thijs, Agnieszka Ciarka, Jerome Zoidakis, Walter Droogné, Antonia Vlahou, Stefan Janssens, Johan Vanhaecke, Johan Van Cleemput, Jan A. Staessen

published 07 Sep 2017

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Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague

Eric D. Merkley, Landon H. Sego, Andy Lin, Owen P. Leiser, Brooke L. Deatherage Kaiser, Joshua N. Adkins, Paul S. Keim, David M. Wagner, Helen W. Kreuzer

published 30 Aug 2017

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Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica

Anna A. Hippmann, Nina Schuback, Kyung-Mee Moon, John P. McCrow, Andrew E. Allen, Leonard J. Foster, Beverley R. Green, Maria T. Maldonado

published 24 Aug 2017

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PRmePRed: A protein arginine methylation prediction tool

Pawan Kumar, Joseph Joy, Ashutosh Pandey, Dinesh Gupta

published 15 Aug 2017

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Dissecting the proteome dynamics of the salt stress induced changes in the leaf of diploid and autotetraploid Paulownia fortunei

Minjie Deng, Yanpeng Dong, Zhenli Zhao, Yongsheng Li, Guoqiang Fan

published 27 Jul 2017

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The enigma of the near-symmetry of proteins: Domain swapping

Maayan Bonjack-Shterengartz, David Avnir

published 14 Jul 2017

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Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics

Angelo Gámez-Pozo, Lucía Trilla-Fuertes, Guillermo Prado-Vázquez, Cristina Chiva, Rocío López-Vacas, Paolo Nanni, Julia Berges-Soria, Jonas Grossmann, Mariana Díaz-Almirón, Eva Ciruelos, Eduard Sabidó, Enrique Espinosa, Juan Ángel Fresno Vara

published 08 Jun 2017

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Proteomic variation and diversity in clinical Streptococcus pneumoniae isolates from invasive and non-invasive sites

Mustapha Bittaye, Phil Cash, Ken Forbes

published 02 Jun 2017

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PGCA: An algorithm to link protein groups created from MS/MS data

David Kepplinger, Mandeep Takhar, Mayu Sasaki, Zsuzsanna Hollander, Derek Smith, Bruce McManus, W. Robert McMaster, Raymond T. Ng, Gabriela V. Cohen Freue

published 31 May 2017

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Combined lipidomic and proteomic analysis of isolated human islets exposed to palmitate reveals time-dependent changes in insulin secretion and lipid metabolism

Kirsten Roomp, Hjalti Kristinsson, Domitille Schvartz, Kumari Ubhayasekera, Ernest Sargsyan, Levon Manukyan, Azazul Chowdhury, Hannes Manell, Venkata Satagopam, Karlfried Groebe, Reinhard Schneider, Jonas Bergquist, Jean-Charles Sanchez, Peter Bergsten

published 27 Apr 2017

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