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Protein structure determination

In silico functional annotation of hypothetical proteins from the Bacillus paralicheniformis strain Bac84 reveals proteins with biotechnological potentials and adaptational functions to extreme environments

Md. Atikur Rahman, Uzma Habiba Heme, Md. Anowar Khasru Parvez

published 13 Oct 2022

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New insights into disordered proteins and regions according to the FOD-M model

Irena Roterman, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny

published 10 Oct 2022

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Validation of the solution structure of dimerization domain of PRC1

Fei Tan, Jin Xu

published 05 Aug 2022

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AlphaFold2 and RoseTTAFold predict posttranslational modifications. Chromophore formation in GFP-like proteins

Sophia M. Hartley, Kelly A. Tiernan, Gjina Ahmetaj, Adriana Cretu, Yan Zhuang, Marc Zimmer

published 16 Jun 2022

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Simultaneous prediction of antibody backbone and side-chain conformations with deep learning

Deniz Akpinaroglu, Jeffrey A. Ruffolo, Sai Pooja Mahajan, Jeffrey J. Gray

published 15 Jun 2022

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DOCKGROUND membrane protein-protein set

Ian Kotthoff, Petras J. Kundrotas, Ilya A. Vakser

published 17 May 2022

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The register shift rules for βαβ-motifs for de novo protein design

Hiroto Murata, Hayao Imakawa, Nobuyasu Koga, George Chikenji

published 30 Aug 2021

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Including residual contact information into replica-exchange MD simulations significantly enriches native-like conformations

Arthur Voronin, Marie Weiel, Alexander Schug

published 16 Nov 2020

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NMR resonance assignment and structure prediction of the C-terminal domain of the microtubule end-binding protein 3

Hazem Abdelkarim, Ben Hitchinson, Xinyan Qu, Avik Banerjee, Yulia A. Komarova, Vadim Gaponenko

published 18 May 2020

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QUATgo: Protein quaternary structural attributes predicted by two-stage machine learning approaches with heterogeneous feature encoding

Chi-Hua Tung, Ching-Hsuan Chien, Chi-Wei Chen, Lan-Ying Huang, Yu-Nan Liu, Yen-Wei Chu

published 29 Apr 2020

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SPECS: Integration of side-chain orientation and global distance-based measures for improved evaluation of protein structural models

Rahul Alapati, Md. Hossain Shuvo, Debswapna Bhattacharya

published 13 Feb 2020

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Protein model accuracy estimation based on local structure quality assessment using 3D convolutional neural network

Rin Sato, Takashi Ishida

published 05 Sep 2019

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Conformational characterization of a novel anti-HER2 candidate antibody

Leina Moro Pérez, Azalia de la Caridad Rodríguez Taño, Lázaro Roberto Martín Márquez, Jose Alberto Gómez Pérez, Aisel Valle Garay, Rancés Blanco Santana

published 09 May 2019

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