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Protein interaction networks

Beyond Element-Wise Interactions: Identifying Complex Interactions in Biological Processes

Christophe Ladroue, Shuixia Guo, Keith Kendrick, Jianfeng Feng

Maximum Entropy Reconstructions of Dynamic Signaling Networks from Quantitative Proteomics Data

Jason W. Locasale, Alejandro Wolf-Yadlin

Reverse Engineering of the Spindle Assembly Checkpoint

Andreas Doncic, Eshel Ben-Jacob, Shmuel Einav, Naama Barkai

Mining Biological Pathways Using WikiPathways Web Services

Thomas Kelder, Alexander R. Pico, [ ... ], Bruce R. Conklin

Local Network Topology in Human Protein Interaction Data Predicts Functional Association

Hua Li, Shoudan Liang

Layered Functional Network Analysis of Gene Expression in Human Heart Failure

Wenliang Zhu, Lei Yang, Zhimin Du

A Systems Biology-Based Gene Expression Classifier of Glioblastoma Predicts Survival with Solid Tumors

Jing Zhang, Bing Liu, [ ... ], Sonya Wei Song

Expression Profiling of Human Genetic and Protein Interaction Networks in Type 1 Diabetes

Regine Bergholdt, Caroline Brorsson, [ ... ], Flemming Pociot

Evidence for the Concerted Evolution between Short Linear Protein Motifs and Their Flanking Regions

Claudia Chica, Francesca Diella, Toby J. Gibson

Optimized Null Model for Protein Structure Networks

Tijana Milenković, Ioannis Filippis, Michael Lappe, Nataša Pržulj

Fine-Scale Dissection of Functional Protein Network Organization by Statistical Network Analysis

Kakajan Komurov, Mehmet H. Gunes, Michael A. White

Influence of Protein Abundance on High-Throughput Protein-Protein Interaction Detection

Joseph Ivanic, Xueping Yu, Anders Wallqvist, Jaques Reifman

A Big World Inside Small-World Networks

Zhihua Zhang, Jianzhi Zhang

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