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Protein folding

QuPepFold: A python package for hybrid quantum-classical protein folding simulations with CVaR-optimized VQE

Akshay Uttarkar, Vidya Niranjan, Amit Saxena, Vinay Kumar

published 11 Feb 2026

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Proteomic profiling of a Sporobolomyces yeast reveals global responses to UV-B–induced oxidative stress

Ranko Gacesa, Raymond Chung, Suikinai Nobre Santos, Gabriel Padilla, Itamar Soares Melo, Paul F. Long

published 11 Feb 2026

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Mapping SBiP1 protein-protein interactions in Symbiodinium microadriaticum CassKB8 using the Yeast Two-Hybrid assay and structural prediction

Estefanía Morales-Ruiz, Tania Islas-Flores, Marco A. Villanueva

published 06 Feb 2026

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A putative membrane-associated YdjB-like protein from Salmonella enterica exhibits a non-canonical ACT-like fold

Ju Hyeong Kim, Yong Jun Kang, Young Woo Kang, So Eun Park, Hyo Been Jin, Eunmi Hong, Hyun Ho Park

published 11 Dec 2025

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Effect of depression and serotonin reuptake inhibitors antidepressant treatment during pregnancy on protein expression in the human placenta: A quantitative proteomics analysis

Linda Ok, Leanne Ohlund, Amy M. Inkster, Kayleigh S. J. Campbell, Maria S. Peñaherrera, Ursula Brain, Lekha Sleno, Wendy P. Robinson, Amadou Barry, Tim F. Oberlander, Cathy Vaillancourt

published 11 Dec 2025

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Molecular and evolutionary determinants for protein interaction within a class II aldolase/Adducin domain

Marina E. Seheon, Amalia S. Parra, Christopher A. Johnston

published 10 Nov 2025

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One IV HEDGES DNA vector administration encoding hGLA or hGH produces durable hGLA and hGH serum lvels in immunocompetent mice

Alice Ye, Marissa Mack, Sarah Ursu, Stephen Chmura, Robert Steiner, Tim Heath, Chakkrapong Handumrongkul, Robert Debs

published 31 Oct 2025

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Proteomic analysis unveils host-parasite interactions in Aedes togoi infected with Dirofilaria immitis and Brugia pahangi

Wei Yin Vinnie-Siow, Van Lun Low, Hwa Chia Chai, Yvonne Ai-Lian Lim, Tiong Kai Tan

published 09 Jul 2025

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Tracing the function expansion for a primordial protein fold in the era of fold-based function prediction: β-trefoil

Moushmi Goswami, Subhashini Srinivasan

published 03 Jul 2025

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Titration-WB: A methodology for accurate quantitative protein determination overcoming reproducibility errors

Alice Maestri, Ewa Ehrenborg, Olivera Werngren, Maria Olin, Carolina E. Hagberg, Matteo Pedrelli, Paolo Parini

published 12 Jun 2025

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Chameleon sequences—Structural effects

Mateusz Slupina, Katarzyna Stapor, Leszek Konieczny, Krzysztof Gądek, Piotr Nowakowski, Irena Roterman

published 22 Apr 2025

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Comparative analysis of protein expression between oesophageal adenocarcinoma and normal adjacent tissue

Ben Nicholas, Alistair Bailey, Katy J. McCann, Robert C. Walker, Peter Johnson, Tim Elliott, Tim J. Underwood, Paul Skipp

published 12 Mar 2025

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Deciphering the interactome of Ataxin-2 and TDP-43 in iPSC-derived neurons for potential ALS targets

Yuan Tian, Nicolette Heinsinger, Yinghui Hu, U-Ming Lim, Yi Wang, Aaron Zefrin Fernandis, Sophie Parmentier-Batteur, Becky Klein, Jason M. Uslaner, Sean M. Smith

published 31 Dec 2024

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