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Phylogenetics

Molecular diversity of deep-sea fishes (Actinopterygii: Teleostei) in the western South Atlantic: A high diversity and new findings revealed by DNA barcoding

Heloísa De Cia Caixeta, Claudio Oliveira, Marcelo Roberto Souto de Melo

published 14 Jul 2026

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Genomic surveillance of carbapenem-resistant Acinetobacter baumannii from bloodstream infections in Thailand reveals widespread dissemination of bla_NDM–harboring mobile genetic elements

Aekkawat Unahalekhaka, Kulsumpun Krobanan, Watcharaporn Kamjumphol, Phimrata Leethongdee, Yanisa Sukheephak, Patchaya Boonjan, Kasidet Thapaan, Wiphat Klayut, Orapan Sripichai, Nalumon Thadtapong, Chattip Kurehong, Kranokpron Moolwang, Donlaya Muanplueng, Warawan Wongboot, Pilailuk Akkapaiboon Okada, Jiraphan Premsuriya

published 13 Jul 2026

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Complete genomes of two Ikeda-genotype Orientia tsutsugamushi isolates from South Korea reveal within-lineage divergence and contrast with the Boryong reference strain

Hyungsuk Kang, Yeon-Joo Choi, Kyeonghye Guk, Misoon Kim, Kwangjun Lee, Won-Jong Jang

published 09 Jul 2026

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Geographic and Orientia infection status influence on the bacterial microbiome of free-living chiggers in North Carolina, USA

Kaiying Chen, Nicholas V. Travanty, Reuben A. Garshong, Gideon Wasserberg, Charles S. Apperson, R. Michael Roe, Loganathan Ponnusamy

published 08 Jul 2026

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Integrative analyses reveal the evolution of the Old World Swallowtail in the Palearctic

Valentina Todisco, Jennifer F. Hoyal Cuthill, Anatoly Krupitsky, Galina Shapoval, Boris Nalitkin, Anna Romanovich, Raluca Vodă, Marko Mutanen, Roger Vila, Nazar Shapoval, Vazrick Nazari

published 08 Jul 2026

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Beyond traditional outbreak investigation: Using genomic data for enhanced detection of COVID-19 disease clusters in Utah

Mary Jewell, Abbey Marye, Bree Barbeau, Kelly Oakeson

published 08 Jul 2026

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Morphology and phylogeny of Avicennia marina (Forssk.) Vierh. in Iran

Farrokh Ghahremaninejad

published 07 Jul 2026

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Genetic structure of traditional cacao reveals four new genetic lineages in indigenous Amazonian sites in Peru

Lambert A. Motilal, Martha S. Calderon, Danilo E. Bustamante, David Gopaulchan, Daniel Tineo, Fanny R. Márquez-Romero, Sphyros Lastra, Jorge R. Diaz-Valderrama, Juan Carlos Guerrero-Abad, Manuel Oliva, Pathmanathan Umaharan

published 06 Jul 2026

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Siphonophore genome structure and the evolution of functional specialization

Namrata Ahuja, Darrin T. Schultz, Dalila Destanović, Samuel H. Church, Natasha Picciani, Catriona Munro, Koto Kon-Nanjo, Tetsuo Kon, Maciej K. Mańko, Wendy Shi, Oleg Simakov, Casey W. Dunn

published 02 Jul 2026

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Whole-genome sequencing reveals a previously unrecognized measles virus cluster in Burundi

Néhémie Nzoyikorera, David F. Nieuwenhuijse, Leonard Schuele, Cassien Nduwimana, Armstrong Ndihokubwayo, Théogène Ihorimbere, Denis Niyomwungere, Hayley Cassidy, Marjan Boter, Celestin Nibogora, Richard Molenkamp, Alexis Niyomwungere, Dionis Nizigiyimana, Marie Noelle Uwineza, Idrissa Diawara, Saria Otani, Rogier Bodewes, Frank M. Aarestrup, Marion Koopmans, Joseph Nyandwi, Bas B. Oude Munnink

published 30 Jun 2026

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Phylogeography of the Black Kite (Milvus migrans) in Punjab Wetlands: Assessing genetic connectivity and lineage admixture at a migratory crossroads

Muhammad Zeshan Haider, Gulnaz Afzal, Hafiz Ishfaq Ahmad, Javed Hussain, Iram Qadeer, Shakeel Ahmed, Laila A. AL-Essa, Nisar Ahmad Koka, Aiman A. Alsaegh, Yehia Hazzazi

published 29 Jun 2026

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Detection of Coxsackievirus A24v during an acute haemorrhagic conjunctivitis outbreak in Dar es Salaam, Tanzania, January-February 2024

Lawrence A. Mapunda, Peter van Heusden, Robert Baluhya, Olympia G. Machange, Ambele Mwafulango, Monica Fredrick Francis, Aziz Ituka, Omega Machange, Adela Kisanga, Edna E. Mgimba, Hamza H. Matimba, Dennis M. Kado, Elson E. Kimaro, Ramadhani A. Libenanga, Jackson Peter Mushumbusi, Hamisi M. Swalehe, Ibrahim Mauki, James Hellar, Shimba Henerico, Maria E. Kelly, Nyambura Moremi

published 25 Jun 2026

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A tale of SARS-CoV-2 genomic surveillance in Mali: Variants introductions and transmission dynamics

Noumou Yakhouba Keita, Harris Onywera, Mahamadou Abdou, Zeinaba Dicko, Fankélé Mamadou Diarra, Ousmane Kamena, Amidou Diarra, Klèma Marcel Koné, Alhadji Alassane Dicko, Demba Koita, Tinimba Sountoura, Oumar Samaké, Korika Diakité, Soumahila Traoré, Rabiatou Sanogo, Boubacar Doumbia, Ibrehima Guindo

published 25 Jun 2026

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