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Nucleotide sequencing

Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2′-O-methylation sites in human RNA

Md. Harun-Or-Roshid, Nhat Truong Pham, Balachandran Manavalan, Hiroyuki Kurata

published 26 Jun 2024

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Difference in TMPRSS2 usage by Delta and Omicron variants of SARS-CoV-2: Implication for a sudden increase among children

Sosuke Kakee, Kyosuke Kanai, Akeno Tsuneki-Tokunaga, Keisuke Okuno, Noriyuki Namba, Katsuyuki Tomita, Hiroki Chikumi, Seiji Kageyama

published 13 Jun 2024

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Detection and genetic diversity of parechoviruses in children with acute flaccid paralysis in Cameroon

Daniel Kamga Njile, Emmanuel Akongnwi Mugyia, Marie Claire Endegue-Zanga, Jude Anfumbom Kfutwah, Marlise Dontsop Djoumetio, Boyomo Onana, Ousmane Madiagne Diop, Richard Njouom, Serge Alain Sadeuh-Mba

published 29 May 2024

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A culture-independent nucleic acid diagnostics method for use in the detection and quantification of Burkholderia cepacia complex contamination in aqueous finished pharmaceutical products

Huong Duong, Elizabeth Minogue, Shannon Fullbrook, Thomas Barry, Kate Reddington

published 16 May 2024

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A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

published 26 Apr 2024

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Molecular epidemiological study of Scrub Typhus in residence, farm and forest habitats from Yunnan Province, China

Jia-Wei Tian, Yi-Chen Kong, Pei-Yu Han, Fen-Hui Xu, Wei-Hong Yang, Yun-Zhi Zhang

published 16 Apr 2024

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Genetic diversity and phylogeographic patterns of the peacock jewel-damselfly, Rhinocypha fenestrella (Rambur, 1842)

Mamat Noorhidayah, Noor Azrizal-Wahid, Van Lun Low, Norma-Rashid Yusoff

published 05 Apr 2024

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Mottle: Accurate pairwise substitution distance at high divergence through the exploitation of short-read mappers and gradient descent

Alisa Prusokiene, Neil Boonham, Adrian Fox, Thomas P. Howard

published 21 Mar 2024

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JUN mRNA translation regulation is mediated by multiple 5’ UTR and start codon features

Angélica M. González-Sánchez, Eimy A. Castellanos-Silva, Gabriela Díaz-Figueroa, Jamie H. D. Cate

published 14 Mar 2024

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HaplotagLR: An efficient and configurable utility for haplotagging long reads

Monica J. Holmes, Babak Mahjour, Christopher P. Castro, Gregory A. Farnum, Adam G. Diehl, Alan P. Boyle

published 13 Mar 2024

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Otariid gammaherpesvirus 1 in South American fur seals (Arctocephalus australis) and a novel related herpesvirus in free-ranging South American sea lions (Otaria byronia): Prevalence and effects of age, sex, and sample type

Karisa N. Tang, Michael J. Adkesson, Susana Cárdenas-Alayza, Laura Adamovicz, Alissa C. Deming, James F. X. Wellehan, April Childress, Galaxia Cortes-Hinojosa, Kathleen Colegrove, Jennifer N. Langan, Matthew C. Allender

published 06 Mar 2024

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New insights on mcr-1-harboring plasmids from human clinical Escherichia coli isolates

Florencia Martino, Alejandro Petroni, María Alejandra Menocal, Alejandra Corso, Roberto Melano, Diego Faccone

published 26 Feb 2024

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Identification of self-incompatibility alleles in Quince (Cydonia oblonga Mill.)

Sara Sadeghnejad, Hamid Abdollahi, Daryoush Davoodi, Maryam Tatari, Mahmoud Khosroshahli

published 08 Feb 2024

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