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Nucleosome mapping

Improving genome-wide mapping of nucleosomes in Trypanosome cruzi.

Paula Beati, Milena Massimino Stepñicka, Salomé C. Vilchez Larrea, Pablo Smircich, Guillermo D. Alonso, Josefina Ocampo

published 21 Nov 2023

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Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1

Guillaume Gaullier, Genevieve Roberts, Uma M. Muthurajan, Samuel Bowerman, Johannes Rudolph, Jyothi Mahadevan, Asmita Jha, Purushka S. Rae, Karolin Luger

published 03 Nov 2020

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Nucleosome DNA unwrapping does not affect prototype foamy virus integration efficiency or site selection

Randi M. Mackler, Nathan D. Jones, Anne M. Gardner, Miguel A. Lopez Jr., Cecil J. Howard, Richard Fishel, Kristine E. Yoder

published 13 Mar 2019

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Parallel mapping with site-directed hydroxyl radicals and micrococcal nuclease reveals structural features of positioned nucleosomes in vivo

Tomohiro Fuse, Koji Katsumata, Koya Morohoshi, Yukio Mukai, Yuichi Ichikawa, Hitoshi Kurumizaka, Akio Yanagida, Takeshi Urano, Hiroaki Kato, Mitsuhiro Shimizu

published 26 Oct 2017

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CAM: A quality control pipeline for MNase-seq data

Sheng’en Hu, Xiaolan Chen, Ji Liao, Yiqing Chen, Chengchen Zhao, Yong Zhang

published 07 Aug 2017

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A comparison of nucleosome organization in Drosophila cell lines

Rebecca L. Martin, John Maiorano, Greg J. Beitel, John F. Marko, Graham McVicker, Yvonne N. Fondufe-Mittendorf

published 01 Jun 2017

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Genome-scale identification of nucleosome organization by using 1000 porcine oocytes at different developmental stages

Chenyu Tao, Juan Li, Baobao Chen, Daming Chi, Yaqiong Zeng, Honglin Liu

published 23 Mar 2017

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Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast

Martin Lukačišin, Matthieu Landon, Rishi Jajoo

published 16 Mar 2017

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Multiplexing Genetic and Nucleosome Positioning Codes: A Computational Approach

Behrouz Eslami-Mossallam, Raoul D. Schram, Marco Tompitak, John van Noort, Helmut Schiessel

published 07 Jun 2016

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Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact

Puya G. Yazdi, Brian A. Pedersen, Jared F. Taylor, Omar S. Khattab, Yu-Han Chen, Yumay Chen, Steven E. Jacobsen, Ping H. Wang

published 26 Aug 2015

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Nucleosome Organization in Human Embryonic Stem Cells

Puya G. Yazdi, Brian A. Pedersen, Jared F. Taylor, Omar S. Khattab, Yu-Han Chen, Yumay Chen, Steven E. Jacobsen, Ping H. Wang

published 25 Aug 2015

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DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity

Monica Naughtin, Zofia Haftek-Terreau, Johan Xavier, Sam Meyer, Maud Silvain, Yan Jaszczyszyn, Nicolas Levy, Vincent Miele, Mohamed Salah Benleulmi, Marc Ruff, Vincent Parissi, Cédric Vaillant, Marc Lavigne

published 15 Jun 2015

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Differential Nucleosome Occupancies across Oct4-Sox2 Binding Sites in Murine Embryonic Stem Cells

Amy Sebeson, Liqun Xi, Quanwei Zhang, Audrey Sigmund, Ji-Ping Wang, Jonathan Widom, Xiaozhong Wang

published 18 May 2015

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