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Next-generation sequencing

Nested PCR followed by NGS: Validation and application for HPV genotyping of Tunisian cervical samples

Monia Ardhaoui, Emna Ennaifer, Anna Christina De Matos Salim, Flávio Marcom Gomez, Thalja Laasili, Med Samir Boubaker, Ikram Guizani

published 11 Aug 2021

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Prolonged detection of complete viral genomes demonstrated by SARS-CoV-2 sequencing of serial respiratory specimens

Neta S. Zuckerman, Efrat Bucris, Oran Erster, Michal Mandelboim, Amos Adler, Saar Burstein, Noam Protter, Moran Szwarcwort-Cohen, Ella Mendelson, Orna Mor

published 05 Aug 2021

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Molecular diet studies of water mites reveal prey biodiversity

Adrian A. Vasquez, Obadeh Mohiddin, Zeyu Li, Brittany L. Bonnici, Katherine Gurdziel, Jeffrey L. Ram

published 29 Jul 2021

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Archival bone marrow smears are useful in targeted next-generation sequencing for diagnosing myeloid neoplasms

Daichi Sadato, Chizuko Hirama, Ai Kaiho-Soma, Ayaka Yamaguchi, Hiroko Kogure, Sonomi Takakuwa, Mina Ogawa, Noriko Doki, Kazuteru Ohashi, Hironori Harada, Keisuke Oboki, Yuka Harada

published 23 Jul 2021

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Evaluation of serverless computing for scalable execution of a joint variant calling workflow

Aji John, Kathleen Muenzen, Kristiina Ausmees

published 09 Jul 2021

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Next-generation sequencing of BRCA1 and BRCA2 genes in Moroccan prostate cancer patients with positive family history

Fatiha Salmi, Fatima Maachi, Amal Tazzite, Rachid Aboutaib, Jamal Fekkak, Houssine Azeddoug, Hassan Jouhadi

published 09 Jul 2021

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Immunoglobulin gene rearrangement in Koreans with multiple myeloma: Clonality assessment and repertoire analysis using next-generation sequencing

Miyoung Kim, Kibum Jeon, Kasey Hutt, Alyssa M. Zlotnicki, Hyo Jung Kim, Jiwon Lee, Han-Sung Kim, Hee Jung Kang, Young Kyung Lee

published 24 Jun 2021

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Allele and haplotype frequencies of human leukocyte antigen-A, -B, -C, -DRB1, -DRB3/4/5, -DQA1, -DQB1, -DPA1, and -DPB1 by next generation sequencing-based typing in Koreans in South Korea

In-Cheol Baek, Eun-Jeong Choi, Dong-Hwan Shin, Hyoung-Jae Kim, Haeyoun Choi, Tai-Gyu Kim

published 21 Jun 2021

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PAN2HGENE–tool for comparative analysis and identifying new gene products

Mônica Silva de Oliveira, Jorianne Thyeska Castro Alves, Pablo Henrique Caracciolo Gomes de Sá, Adonney Allan de Oliveira Veras

published 28 May 2021

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RT-qPCR assay for detection of mink astrovirus in outbreaks of diarrhea on Danish mink farms

Sofie Barsøe, Karin Ullman, Mikael Leijon, Kjell Olof Hedlund, Jonas Klingström, Louise Iuel Krarup, Lars Andresen, Michelle Lauge Quaade, Anne Sofie Hammer

published 26 May 2021

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ChromInst: A single cell sequencing technique to accomplish pre-implantation comprehensive chromosomal screening overnight

Fang-Fang Gao, Li Chen, Shi-Ping Bo, Ya-Xin Yao, Zhong-Li Xu, Qing-Yu Ding, Peng Zhang, Si-Jia Lu, Jun Ren

published 20 May 2021

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Assessment of circulating microRNA specific for patients with familial adenomatous polyposis

Tomoki Yamano, Shuji Kubo, Emiko Sonoda, Tomoko Kominato, Kei Kimura, Michiko Yasuhara, Kozo Kataoka, Jihyung Son, Akihito Babaya, Yuya Takenaka, Takaaki Matsubara, Naohito Beppu, Masataka Ikeda

published 04 May 2021

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Evaluation of HA-D222G/N polymorphism using targeted NGS analysis in A(H1N1)pdm09 influenza virus in Russia in 2018–2019

Alexey V. Danilenko, Natalia P. Kolosova, Alexander N. Shvalov, Tatyana N. Ilyicheva, Svetlana V. Svyatchenko, Alexander G. Durymanov, Julia A. Bulanovich, Natalia I. Goncharova, Ivan M. Susloparov, Vasiliy Y. Marchenko, Tatyana V. Tregubchak, Elena V. Gavrilova, Rinat A. Maksyutov, Alexander B. Ryzhikov

published 29 Apr 2021

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