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Next-generation sequencing

ConDeTri - A Content Dependent Read Trimmer for Illumina Data

Linnéa Smeds, Axel Künstner

published 19 Oct 2011

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Expression Profiling without Genome Sequence Information in a Non-Model Species, Pandalid Shrimp (Pandalus latirostris), by Next-Generation Sequencing

Ryouka Kawahara-Miki, Kenta Wada, Noriko Azuma, Susumu Chiba

published 10 Oct 2011

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Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

Dario Cantu, Manjula Govindarajulu, Alex Kozik, Meinan Wang, Xianming Chen, Kenji K. Kojima, Jerzy Jurka, Richard W. Michelmore, Jorge Dubcovsky

published 31 Aug 2011

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LOCAS – A Low Coverage Assembly Tool for Resequencing Projects

Juliane D. Klein, Stephan Ossowski, Korbinian Schneeberger, Detlef Weigel, Daniel H. Huson

published 15 Aug 2011

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Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows

Stefan Siebert, Mark D. Robinson, Sophia C. Tintori, Freya Goetz, Rebecca R. Helm, Stephen A. Smith, Nathan Shaner, Steven H. D. Haddock, Casey W. Dunn

published 29 Jul 2011

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Evaluating the Fidelity of De Novo Short Read Metagenomic Assembly Using Simulated Data

Miguel Pignatelli, Andrés Moya

published 23 May 2011

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Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms

Shingo Suzuki, Naoaki Ono, Chikara Furusawa, Bei-Wen Ying, Tetsuya Yomo

published 17 May 2011

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Targeted Assembly of Short Sequence Reads

René L. Warren, Robert A. Holt

published 11 May 2011

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Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

Mehrdad Hajibabaei, Shadi Shokralla, Xin Zhou, Gregory A. C. Singer, Donald J. Baird

published 13 Apr 2011

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Assessing Matched Normal and Tumor Pairs in Next-Generation Sequencing Studies

Liang Goh, Geng Bo Chen, Ioana Cutcutache, Benjamin Low, Bin Tean Teh, Steve Rozen, Patrick Tan

published 18 Mar 2011

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A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, Yang Yang, Yifei Tang, Jing Shang, Bairong Shen

published 14 Mar 2011

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Decoding a Substantial Set of Samples in Parallel by Massive Sequencing

Mårten Neiman, Sverker Lundin, Peter Savolainen, Afshin Ahmadian

published 09 Mar 2011

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Systematic Evaluation of Three microRNA Profiling Platforms: Microarray, Beads Array, and Quantitative Real-Time PCR Array

Bin Wang, Paul Howel, Skjalg Bruheim, Jingfang Ju, Laurie B. Owen, Oystein Fodstad, Yaguang Xi

published 11 Feb 2011

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