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Next-generation sequencing

Targeted Assembly of Short Sequence Reads

René L. Warren, Robert A. Holt

published 11 May 2011

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Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

Mehrdad Hajibabaei, Shadi Shokralla, Xin Zhou, Gregory A. C. Singer, Donald J. Baird

published 13 Apr 2011

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Assessing Matched Normal and Tumor Pairs in Next-Generation Sequencing Studies

Liang Goh, Geng Bo Chen, Ioana Cutcutache, Benjamin Low, Bin Tean Teh, Steve Rozen, Patrick Tan

published 18 Mar 2011

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A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, Yang Yang, Yifei Tang, Jing Shang, Bairong Shen

published 14 Mar 2011

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Decoding a Substantial Set of Samples in Parallel by Massive Sequencing

Mårten Neiman, Sverker Lundin, Peter Savolainen, Afshin Ahmadian

published 09 Mar 2011

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Systematic Evaluation of Three microRNA Profiling Platforms: Microarray, Beads Array, and Quantitative Real-Time PCR Array

Bin Wang, Paul Howel, Skjalg Bruheim, Jingfang Ju, Laurie B. Owen, Oystein Fodstad, Yaguang Xi

published 11 Feb 2011

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Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads

Schraga Schwartz, Ram Oren, Gil Ast

published 31 Jan 2011

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Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling

Felix Krueger, Simon R. Andrews, Cameron S. Osborne

published 28 Jan 2011

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Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing

Sebastian Jaenicke, Christina Ander, Thomas Bekel, Regina Bisdorf, Marcus Dröge, Karl-Heinz Gartemann, Sebastian Jünemann, Olaf Kaiser, Lutz Krause, Felix Tille, Martha Zakrzewski, Alfred Pühler, Andreas Schlüter, Alexander Goesmann

published 26 Jan 2011

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PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing

Quan Long, Daniel C. Jeffares, Qingrun Zhang, Kai Ye, Viktoria Nizhynska, Zemin Ning, Chris Tyler-Smith, Magnus Nordborg

published 05 Jan 2011

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Mutation Detection with Next-Generation Resequencing through a Mediator Genome

Omri Wurtzel, Mally Dori-Bachash, Shmuel Pietrokovski, Edouard Jurkevitch, Rotem Sorek

published 31 Dec 2010

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Somatic Mutation Profiles of MSI and MSS Colorectal Cancer Identified by Whole Exome Next Generation Sequencing and Bioinformatics Analysis

Bernd Timmermann, Martin Kerick, Christina Roehr, Axel Fischer, Melanie Isau, Stefan T. Boerno, Andrea Wunderlich, Christian Barmeyer, Petra Seemann, Jana Koenig, Michael Lappe, Andreas W. Kuss, Masoud Garshasbi, Lars Bertram, Kathrin Trappe, Martin Werber, Bernhard G. Herrmann, Kurt Zatloukal, Hans Lehrach, Michal R. Schweiger

published 22 Dec 2010

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Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles

Michal Mokry, Pantelis Hatzis, Ewart de Bruijn, Jan Koster, Rogier Versteeg, Jurian Schuijers, Marc van de Wetering, Victor Guryev, Hans Clevers, Edwin Cuppen

published 30 Nov 2010

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