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Next-generation sequencing

Human papillomavirus genotyping using next generation sequencing (NGS) in cervical lesions: Genotypes by histologic grade and their relative proportion in multiple infections

Jorge Alejandro Basiletti, Joan Valls, Tomás Poklépovich, María Dolores Fellner, Maryluz Rol, Rafael Alonso, Rita Mariel Correa, María Celeste Colucci, Mercedes Rodríguez de la Peña, Paula Gabriela Falabella, Agustina Saíno, Josefina Campos, Rolando Herrero, Maribel Almonte, María Alejandra Picconi

published 23 Nov 2022

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Genetic characterization of a novel pheasant-origin orthoreovirus using Next-Generation Sequencing

Yi Tang, Haiyang Yu, Xiaoning Jiang, Endong Bao, Dong Wang, Huaguang Lu

published 21 Nov 2022

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NGSpop: A desktop software that supports population studies by identifying sequence variations from next-generation sequencing data

Dong-Jun Lee, Taesoo Kwon, Hye-Jin Lee, Yun-Ho Oh, Jin-Hyun Kim, Tae-Ho Lee

published 17 Nov 2022

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A PCR-free rapid protocol for one-pot construction of highly diverse genetic libraries

Michael Woolley, Zhilei Chen

published 31 Oct 2022

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Analytical and clinical validation of a custom 15-gene next-generation sequencing panel for the evaluation of circulating tumor DNA mutations in patients with advanced non-small-cell lung cancer

Yock Ping Chow, Norziha Zainul Abidin, Ken Siong Kow, Lye Mun Tho, Chieh Lee Wong

published 18 Oct 2022

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Appendiceal microbiome in uncomplicated and complicated acute appendicitis: A prospective cohort study

Sanja Vanhatalo, Eveliina Munukka, Teemu Kallonen, Suvi Sippola, Juha Grönroos, Jussi Haijanen, Antti J. Hakanen, Paulina Salminen

published 14 Oct 2022

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Novel findings in context of molecular diversity and abundance of bacteriophages in wastewater environments of Riyadh, Saudi Arabia

Fahad Alanazi, Islam Nour, Atif Hanif, Ibrahim Al-Ashkar, Reem M. Aljowaie, Saleh Eifan

published 18 Aug 2022

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Hepatitis C virus transmission cluster among injection drug users in Pakistan

Kashif Iqbal Sahibzada, Lilia Ganova-Raeva, Zoya Dimitrova, Sumathi Ramachandran, Yulin Lin, Garrett Longmire, Leonard Arthur, Guo-liang Xia, Yury Khudyakov, Idrees Khan, Saima Sadaf

published 15 Jul 2022

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High throughput SARS-CoV-2 variant analysis using molecular barcodes coupled with next generation sequencing

Lyora A. Cohen-Aharonov, Annie Rebibo-Sabbah, Adar Yaacov, Roy Z. Granit, Merav Strauss, Raul Colodner, Ori Cheshin, Shai Rosenberg, Ronen Eavri

published 21 Jun 2022

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MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

published 20 May 2022

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A model for isoform-level differential expression analysis using RNA-seq data without pre-specifying isoform structure

Yang Liu, Junying Wang, Song Wu, Jie Yang

published 16 May 2022

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A sheet pocket to prevent cross-contamination of formalin-fixed paraffin-embedded block for application in next generation sequencing

Keiichi Iwaya, Hisae Arai, Nanao Takatou, Yuka Morita, Rinko Ozeki, Hirofumi Nakaoka, Masaru Sakamoto, Tsutomu Kouno, Masayoshi Soma

published 04 May 2022

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Whole genome sequencing of SARS-CoV2 strains circulating in Iran during five waves of pandemic

Jila Yavarian, Ahmad Nejati, Vahid Salimi, Nazanin Zahra Shafiei Jandaghi, Kaveh Sadeghi, Adel Abedi, Ali Sharifi Zarchi, Mohammad Mehdi Gouya, Talat Mokhtari-Azad

published 02 May 2022

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