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Next-generation sequencing

Estimates of Genetic Differentiation Measured by F_ST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

Eva-Maria Willing, Christine Dreyer, Cock van Oosterhout

published 14 Aug 2012

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SAP—A Sequence Mapping and Analyzing Program for Long Sequence Reads Alignment and Accurate Variants Discovery

Zheng Sun, Weidong Tian

published 07 Aug 2012

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Optimized PCR Conditions and Increased shRNA Fold Representation Improve Reproducibility of Pooled shRNA Screens

Žaklina Strezoska, Abel Licon, Josh Haimes, Katie Jansen Spayd, Kruti M. Patel, Kevin Sullivan, Katarzyna Jastrzebski, Kaylene J. Simpson, Devin Leake, Anja van Brabant Smith, Annaleen Vermeulen

published 01 Aug 2012

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Complex Mutations & Subpopulations of Deletions at Exon 19 of EGFR in NSCLC Revealed by Next Generation Sequencing: Potential Clinical Implications

Antonio Marchetti, Maela Del Grammastro, Giampaolo Filice, Lara Felicioni, Giulio Rossi, Paolo Graziano, Giuliana Sartori, Alvaro Leone, Sara Malatesta, Michele Iacono, Luigi Guetti, Patrizia Viola, Felice Mucilli, Franco Cuccurullo, Fiamma Buttitta

published 27 Jul 2012

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DNase SISPA-Next Generation Sequencing Confirms Schmallenberg Virus in Belgian Field Samples and Identifies Genetic Variation in Europe

Toon Rosseel, Matthias Scheuch, Dirk Höper, Nick De Regge, Ann Brigitte Caij, Frank Vandenbussche, Steven Van Borm

published 27 Jul 2012

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SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

Rasmus Nielsen, Thorfinn Korneliussen, Anders Albrechtsen, Yingrui Li, Jun Wang

published 24 Jul 2012

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High-Throughput Multilocus Sequence Typing: Bringing Molecular Typing to the Next Level

Stefan A. Boers, Wil A. van der Reijden, Ruud Jansen

published 18 Jul 2012

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The Cervical Microbiome over 7 Years and a Comparison of Methodologies for Its Characterization

Benjamin C. Smith, Thomas McAndrew, Zigui Chen, Ariana Harari, David M. Barris, Shankar Viswanathan, Ana Cecilia Rodriguez, Phillip Castle, Rolando Herrero, Mark Schiffman, Robert D. Burk

published 09 Jul 2012

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A Novel GUSB Mutation in Brazilian Terriers with Severe Skeletal Abnormalities Defines the Disease as Mucopolysaccharidosis VII

Marjo K. Hytönen, Meharji Arumilli, Anu K. Lappalainen, Heli Kallio, Marjatta Snellman, Kirsi Sainio, Hannes Lohi

published 05 Jul 2012

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Consensus Rules in Variant Detection from Next-Generation Sequencing Data

Peilin Jia, Fei Li, Jufeng Xia, Haiquan Chen, Hongbin Ji, William Pao, Zhongming Zhao

published 08 Jun 2012

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Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

Nicholas A. Bokulich, C. M. Lucy Joseph, Greg Allen, Andrew K. Benson, David A. Mills

published 01 May 2012

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High-Throughput Sequencing of mGluR Signaling Pathway Genes Reveals Enrichment of Rare Variants in Autism

Raymond J. Kelleher III, Ute Geigenmüller, Hayk Hovhannisyan, Edwin Trautman, Robert Pinard, Barbara Rathmell, Randall Carpenter, David Margulies

published 27 Apr 2012

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Discovery of Novel MicroRNAs in Rat Kidney Using Next Generation Sequencing and Microarray Validation

Fanxue Meng, Michael Hackenberg, Zhiguang Li, Jian Yan, Tao Chen

published 28 Mar 2012

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