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Next-generation sequencing

Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach

Alexander Eiler, Stina Drakare, Stefan Bertilsson, Jakob Pernthaler, Sari Peura, Carina Rofner, Karel Simek, Yang Yang, Petr Znachor, Eva S. Lindström

published 22 Jan 2013

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RNA-Seq for Enrichment and Analysis of IRF5 Transcript Expression in SLE

Rivka C. Stone, Peicheng Du, Di Feng, Kopal Dhawan, Lars Rönnblom, Maija-Leena Eloranta, Robert Donnelly, Betsy J. Barnes

published 18 Jan 2013

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HeurAA: Accurate and Fast Detection of Genetic Variations with a Novel Heuristic Amplicon Aligner Program for Next Generation Sequencing

Lőrinc S. Pongor, Ferenc Pintér, István Peták

published 18 Jan 2013

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Exomic Sequencing of Immune-Related Genes Reveals Novel Candidate Variants Associated with Alopecia Universalis

Seungbok Lee, Seung Hwan Paik, Hyun-Jin Kim, Hyeong Ho Ryu, Soeun Cha, Seong Jin Jo, Hee Chul Eun, Jeong-Sun Seo, Jong-Il Kim, Oh Sang Kwon

published 11 Jan 2013

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Comprehensive Mutation Analysis for Congenital Muscular Dystrophy: A Clinical PCR-Based Enrichment and Next-Generation Sequencing Panel

C. Alexander Valencia, Arunkanth Ankala, Devin Rhodenizer, Shruti Bhide, Martin Robert Littlejohn, Lisa Mari Keong, Anne Rutkowski, Susan Sparks, Carsten Bonnemann, Madhuri Hegde

published 11 Jan 2013

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Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons

Francesco Vezzi, Giuseppe Narzisi, Bud Mishra

published 28 Dec 2012

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A Model-Based Clustering Method for Genomic Structural Variant Prediction and Genotyping Using Paired-End Sequencing Data

Matthew Hayes, Yoon Soo Pyon, Jing Li

published 27 Dec 2012

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FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

Haibin Xu, Xiang Luo, Jun Qian, Xiaohui Pang, Jingyuan Song, Guangrui Qian, Jinhui Chen, Shilin Chen

published 20 Dec 2012

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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

Konstantinos Mavromatis, Miriam L. Land, Thomas S. Brettin, Daniel J. Quest, Alex Copeland, Alicia Clum, Lynne Goodwin, Tanja Woyke, Alla Lapidus, Hans Peter Klenk, Robert W. Cottingham, Nikos C. Kyrpides

published 12 Dec 2012

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RNA-Seq vs Dual- and Single-Channel Microarray Data: Sensitivity Analysis for Differential Expression and Clustering

Alina Sîrbu, Gráinne Kerr, Martin Crane, Heather J. Ruskin

published 10 Dec 2012

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Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data

Xianwen Ren, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu, Qi Jin

published 07 Dec 2012

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Onset of Immune Senescence Defined by Unbiased Pyrosequencing of Human Immunoglobulin mRNA Repertoires

Florian Rubelt, Volker Sievert, Florian Knaust, Christian Diener, Theam Soon Lim, Karl Skriner, Edda Klipp, Richard Reinhardt, Hans Lehrach, Zoltán Konthur

published 30 Nov 2012

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Molecular Characterization of Transgene Integration by Next-Generation Sequencing in Transgenic Cattle

Ran Zhang, Yinliang Yin, Yujun Zhang, Kexin Li, Hongxia Zhu, Qin Gong, Jianwu Wang, Xiaoxiang Hu, Ning Li

published 21 Nov 2012

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