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Next-generation sequencing

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

Konstantinos Mavromatis, Miriam L. Land, Thomas S. Brettin, Daniel J. Quest, Alex Copeland, Alicia Clum, Lynne Goodwin, Tanja Woyke, Alla Lapidus, Hans Peter Klenk, Robert W. Cottingham, Nikos C. Kyrpides

published 12 Dec 2012

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RNA-Seq vs Dual- and Single-Channel Microarray Data: Sensitivity Analysis for Differential Expression and Clustering

Alina Sîrbu, Gráinne Kerr, Martin Crane, Heather J. Ruskin

published 10 Dec 2012

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Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data

Xianwen Ren, Tao Liu, Jie Dong, Lilian Sun, Jian Yang, Yafang Zhu, Qi Jin

published 07 Dec 2012

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Onset of Immune Senescence Defined by Unbiased Pyrosequencing of Human Immunoglobulin mRNA Repertoires

Florian Rubelt, Volker Sievert, Florian Knaust, Christian Diener, Theam Soon Lim, Karl Skriner, Edda Klipp, Richard Reinhardt, Hans Lehrach, Zoltán Konthur

published 30 Nov 2012

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Molecular Characterization of Transgene Integration by Next-Generation Sequencing in Transgenic Cattle

Ran Zhang, Yinliang Yin, Yujun Zhang, Kexin Li, Hongxia Zhu, Qin Gong, Jianwu Wang, Xiaoxiang Hu, Ning Li

published 21 Nov 2012

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BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data

Pablo Pareja-Tobes, Marina Manrique, Eduardo Pareja-Tobes, Eduardo Pareja, Raquel Tobes

published 21 Nov 2012

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Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism

John Archer, Jan Weber, Kenneth Henry, Dane Winner, Richard Gibson, Lawrence Lee, Ellen Paxinos, Eric J. Arts, David L. Robertson, Larry Mimms, Miguel E. Quiñones-Mateu

published 14 Nov 2012

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Generation of Artificial FASTQ Files to Evaluate the Performance of Next-Generation Sequencing Pipelines

Matthew Frampton, Richard Houlston

published 12 Nov 2012

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Next-Generation cDNA Screening for Oncogene and Resistance Phenotypes

Nobuaki Shindoh, Akinori Yoda, Yuka Yoda, Timothy J. Sullivan, Oliver Weigert, Andrew A. Lane, Nadja Kopp, Liat Bird, Scott J. Rodig, Edward A. Fox, David M. Weinstock

published 07 Nov 2012

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Combining Next-Generation Sequencing and Microarray Technology into a Transcriptomics Approach for the Non-Model Organism Chironomus riparius

Marino Marinković, Wim C. de Leeuw, Mark de Jong, Michiel H. S. Kraak, Wim Admiraal, Timo M. Breit, Martijs J. Jonker

published 25 Oct 2012

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lociNGS: A Lightweight Alternative for Assessing Suitability of Next-Generation Loci for Evolutionary Analysis

Sarah M. Hird

published 10 Oct 2012

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miR-BAG: Bagging Based Identification of MicroRNA Precursors

Ashwani Jha, Rohit Chauhan, Mrigaya Mehra, Heikham Russiachand Singh, Ravi Shankar

published 25 Sep 2012

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Improving Indel Detection Specificity of the Ion Torrent PGM Benchtop Sequencer

Zhen Xuan Yeo, Maurice Chan, Yoon Sim Yap, Peter Ang, Steve Rozen, Ann Siew Gek Lee

published 19 Sep 2012

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