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Next-generation sequencing

A Model-Based Clustering Method for Genomic Structural Variant Prediction and Genotyping Using Paired-End Sequencing Data

Matthew Hayes, Yoon Soo Pyon, Jing Li

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

Haibin Xu, Xiang Luo, [ ... ], Shilin Chen

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

Konstantinos Mavromatis, Miriam L. Land, [ ... ], Nikos C. Kyrpides

RNA-Seq vs Dual- and Single-Channel Microarray Data: Sensitivity Analysis for Differential Expression and Clustering

Alina Sîrbu, Gráinne Kerr, Martin Crane, Heather J. Ruskin

Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data

Xianwen Ren, Tao Liu, [ ... ], Qi Jin

Onset of Immune Senescence Defined by Unbiased Pyrosequencing of Human Immunoglobulin mRNA Repertoires

Florian Rubelt, Volker Sievert, [ ... ], Zoltán Konthur

Molecular Characterization of Transgene Integration by Next-Generation Sequencing in Transgenic Cattle

Ran Zhang, Yinliang Yin, [ ... ], Ning Li

BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data

Pablo Pareja-Tobes, Marina Manrique, [ ... ], Raquel Tobes

Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism

John Archer, Jan Weber, [ ... ], Miguel E. Quiñones-Mateu

Generation of Artificial FASTQ Files to Evaluate the Performance of Next-Generation Sequencing Pipelines

Matthew Frampton, Richard Houlston

Next-Generation cDNA Screening for Oncogene and Resistance Phenotypes

Nobuaki Shindoh, Akinori Yoda, [ ... ], David M. Weinstock

Combining Next-Generation Sequencing and Microarray Technology into a Transcriptomics Approach for the Non-Model Organism Chironomus riparius

Marino Marinković, Wim C. de Leeuw, [ ... ], Martijs J. Jonker

lociNGS: A Lightweight Alternative for Assessing Suitability of Next-Generation Loci for Evolutionary Analysis

Sarah M. Hird

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