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Next-generation sequencing

Enhanced De Novo Assembly of High Throughput Pyrosequencing Data Using Whole Genome Mapping

Fatma Onmus-Leone, Jun Hang, Robert J. Clifford, Yu Yang, Matthew C. Riley, Robert A. Kuschner, Paige E. Waterman, Emil P. Lesho

published 17 Apr 2013

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Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data

Aarti Desai, Veer Singh Marwah, Akshay Yadav, Vineet Jha, Kishor Dhaygude, Ujwala Bangar, Vivek Kulkarni, Abhay Jere

published 12 Apr 2013

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CGAP-Align: A High Performance DNA Short Read Alignment Tool

Yaoliang Chen, Ji Hong, Wanyun Cui, Jacques Zaneveld, Wei Wang, Richard Gibbs, Yanghua Xiao, Rui Chen

published 11 Apr 2013

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QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data

Qian Zhou, Xiaoquan Su, Anhui Wang, Jian Xu, Kang Ning

published 02 Apr 2013

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CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes

Shin-Hung Lin, Yu-Chieh Liao

published 28 Mar 2013

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Clustering and Alignment of Polymorphic Sequences for HLA-DRB1 Genotyping

Steven Ringquist, Gaia Bellone, Ying Lu, Kathryn Roeder, Massimo Trucco

published 28 Mar 2013

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Quantitative and Sensitive Detection of GNAS Mutations Causing McCune-Albright Syndrome with Next Generation Sequencing

Satoshi Narumi, Kumihiro Matsuo, Tomohiro Ishii, Yusuke Tanahashi, Tomonobu Hasegawa

published 25 Mar 2013

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Compression of FASTQ and SAM Format Sequencing Data

James K. Bonfield, Matthew V. Mahoney

published 22 Mar 2013

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Meta-Analysis of Pulsed-Field Gel Electrophoresis Fingerprints Based on a Constructed Salmonella Database

Wen Zou, Hung-Chia Chen, Kelley B. Hise, Hailin Tang, Steven L. Foley, Joe Meehan, Wei-Jiun Lin, Rajesh Nayak, Joshua Xu, Hong Fang, James J. Chen

published 14 Mar 2013

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An Artificial Functional Family Filter in Homolog Searching in Next-generation Sequencing Metagenomics

Ruofei Du, Donald Mercante, Zhide Fang

published 14 Mar 2013

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Analysis of Metagenomic Data Containing High Biodiversity Levels

José R. Valverde, Rafael P. Mellado

published 07 Mar 2013

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Next Generation Sequencing Reveals the Expression of a Unique miRNA Profile in Response to a Gram-Positive Bacterial Infection

Nathan Lawless, Amir B. K. Foroushani, Matthew S. McCabe, Cliona O’Farrelly, David J. Lynn

published 05 Mar 2013

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Assessing the Impact of Differential Genotyping Errors on Rare Variant Tests of Association

Morgan Mayer-Jochimsen, Shannon Fast, Nathan L. Tintle

published 05 Mar 2013

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