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Next-generation sequencing

Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data

Aarti Desai, Veer Singh Marwah, [ ... ], Abhay Jere

CGAP-Align: A High Performance DNA Short Read Alignment Tool

Yaoliang Chen, Ji Hong, [ ... ], Rui Chen

QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data

Qian Zhou, Xiaoquan Su, [ ... ], Kang Ning

CISA: Contig Integrator for Sequence Assembly of Bacterial Genomes

Shin-Hung Lin, Yu-Chieh Liao

Clustering and Alignment of Polymorphic Sequences for HLA-DRB1 Genotyping

Steven Ringquist, Gaia Bellone, [ ... ], Massimo Trucco

Quantitative and Sensitive Detection of GNAS Mutations Causing McCune-Albright Syndrome with Next Generation Sequencing

Satoshi Narumi, Kumihiro Matsuo, [ ... ], Tomonobu Hasegawa

Compression of FASTQ and SAM Format Sequencing Data

James K. Bonfield, Matthew V. Mahoney

Meta-Analysis of Pulsed-Field Gel Electrophoresis Fingerprints Based on a Constructed Salmonella Database

Wen Zou, Hung-Chia Chen, [ ... ], James J. Chen

An Artificial Functional Family Filter in Homolog Searching in Next-generation Sequencing Metagenomics

Ruofei Du, Donald Mercante, Zhide Fang

Analysis of Metagenomic Data Containing High Biodiversity Levels

José R. Valverde, Rafael P. Mellado

Next Generation Sequencing Reveals the Expression of a Unique miRNA Profile in Response to a Gram-Positive Bacterial Infection

Nathan Lawless, Amir B. K. Foroushani, [ ... ], David J. Lynn

Assessing the Impact of Differential Genotyping Errors on Rare Variant Tests of Association

Morgan Mayer-Jochimsen, Shannon Fast, Nathan L. Tintle

TagGD: Fast and Accurate Software for DNA Tag Generation and Demultiplexing

Paul Igor Costea, Joakim Lundeberg, Pelin Akan

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