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Next-generation sequencing

SomatiCA: Identifying, Characterizing and Quantifying Somatic Copy Number Aberrations from Cancer Genome Sequencing Data

Mengjie Chen, Murat Gunel, Hongyu Zhao

published 12 Nov 2013

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Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

Penelope K. Lindeque, Helen E. Parry, Rachel A. Harmer, Paul J. Somerfield, Angus Atkinson

published 07 Nov 2013

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Validation of SNP Allele Frequencies Determined by Pooled Next-Generation Sequencing in Natural Populations of a Non-Model Plant Species

Christian Rellstab, Stefan Zoller, Andrew Tedder, Felix Gugerli, Martin C. Fischer

published 07 Nov 2013

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Alzheimer’s Disease: Analyzing the Missing Heritability

Perry G. Ridge, Shubhabrata Mukherjee, Paul K. Crane, John S. K. Kauwe, Alzheimer’s Disease Genetics Consortium

published 07 Nov 2013

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HLA Typing from 1000 Genomes Whole Genome and Whole Exome Illumina Data

Endre Major, Krisztina Rigó, Tim Hague, Attila Bérces, Szilveszter Juhos

published 06 Nov 2013

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A Pilot Study Using Next-Generation Sequencing in Advanced Cancers: Feasibility and Challenges

Glen J. Weiss, Winnie S. Liang, Michael J. Demeure, Jeff A. Kiefer, Galen Hostetter, Tyler Izatt, Shripad Sinari, Alexis Christoforides, Jessica Aldrich, Ahmet Kurdoglu, Lori Phillips, Hollie Benson, Rebecca Reiman, Angela Baker, Vickie Marsh, Daniel D. Von Hoff, John D. Carpten, David W. Craig

published 30 Oct 2013

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Identification of Novel Viruses Using VirusHunter -- an Automated Data Analysis Pipeline

Guoyan Zhao, Siddharth Krishnamurthy, Zhengqiu Cai, Vsevolod L. Popov, Amelia P. Travassos da Rosa, Hilda Guzman, Song Cao, Herbert W. Virgin, Robert B. Tesh, David Wang

published 22 Oct 2013

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Performance Comparison of Digital microRNA Profiling Technologies Applied on Human Breast Cancer Cell Lines

Erik Knutsen, Tonje Fiskaa, Anita Ursvik, Tor Erik Jørgensen, Maria Perander, Eiliv Lund, Ole Morten Seternes, Steinar D. Johansen, Morten Andreassen

published 08 Oct 2013

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NeSSM: A Next-Generation Sequencing Simulator for Metagenomics

Ben Jia, Liming Xuan, Kaiye Cai, Zhiqiang Hu, Liangxiao Ma, Chaochun Wei

published 04 Oct 2013

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Using Next-Generation Sequencing to Analyse the Diet of a Highly Endangered Land Snail (Powelliphanta augusta) Feeding on Endemic Earthworms

Stéphane Boyer, Stephen D. Wratten, Andrew Holyoake, Jawad Abdelkrim, Robert H. Cruickshank

published 27 Sep 2013

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Variant Callers for Next-Generation Sequencing Data: A Comparison Study

Xiangtao Liu, Shizhong Han, Zuoheng Wang, Joel Gelernter, Bao-Zhu Yang

published 27 Sep 2013

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Comparing Memory-Efficient Genome Assemblers on Stand-Alone and Cloud Infrastructures

Dimitrios Kleftogiannis, Panos Kalnis, Vladimir B. Bajic

published 27 Sep 2013

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Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination

Francesca Di Giallonardo, Osvaldo Zagordi, Yannick Duport, Christine Leemann, Beda Joos, Marzanna Künzli-Gontarczyk, Rémy Bruggmann, Niko Beerenwinkel, Huldrych F. Günthard, Karin J. Metzner

published 18 Sep 2013

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