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Next-generation sequencing

Comparison of Metatranscriptomic Samples Based on k-Tuple Frequencies

Ying Wang, Lin Liu, Lina Chen, Ting Chen, Fengzhu Sun

published 02 Jan 2014

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An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Cristian Del Fabbro, Simone Scalabrin, Michele Morgante, Federico M. Giorgi

published 23 Dec 2013

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Next-Generation Sequencing of Lung Cancer EGFR Exons 18-21 Allows Effective Molecular Diagnosis of Small Routine Samples (Cytology and Biopsy)

Dario de Biase, Michela Visani, Umberto Malapelle, Francesca Simonato, Valentina Cesari, Claudio Bellevicine, Annalisa Pession, Giancarlo Troncone, Ambrogio Fassina, Giovanni Tallini

published 23 Dec 2013

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Inferring Short-Range Linkage Information from Sequencing Chromatograms

Bastian Beggel, Maria Neumann-Fraune, Rolf Kaiser, Jens Verheyen, Thomas Lengauer

published 20 Dec 2013

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SoftSearch: Integration of Multiple Sequence Features to Identify Breakpoints of Structural Variations

Steven N. Hart, Vivekananda Sarangi, Raymond Moore, Saurabh Baheti, Jaysheel D. Bhavsar, Fergus J. Couch, Jean-Pierre A. Kocher

published 16 Dec 2013

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Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

Martin Kemler, Jeff Garnas, Michael J. Wingfield, Marieka Gryzenhout, Kerry-Anne Pillay, Bernard Slippers

published 16 Dec 2013

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SRComp: Short Read Sequence Compression Using Burstsort and Elias Omega Coding

Jeremy John Selva, Xin Chen

published 13 Dec 2013

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RNA-Seq Transcriptome Profiling of Upland Cotton (Gossypium hirsutum L.) Root Tissue under Water-Deficit Stress

Megan J. Bowman, Wonkeun Park, Philip J. Bauer, Joshua A. Udall, Justin T. Page, Joshua Raney, Brian E. Scheffler, Don. C. Jones, B. Todd Campbell

published 06 Dec 2013

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Genomic DNA Enrichment Using Sequence Capture Microarrays: a Novel Approach to Discover Sequence Nucleotide Polymorphisms (SNP) in Brassica napus L

Wayne E. Clarke, Isobel A. Parkin, Humberto A. Gajardo, Daniel J. Gerhardt, Erin Higgins, Christine Sidebottom, Andrew G. Sharpe, Rod J. Snowdon, Maria L. Federico, Federico L. Iniguez-Luy

published 03 Dec 2013

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Increasing the Yield in Targeted Next-Generation Sequencing by Implicating CNV Analysis, Non-Coding Exons and the Overall Variant Load: The Example of Retinal Dystrophies

Tobias Eisenberger, Christine Neuhaus, Arif O. Khan, Christian Decker, Markus N. Preising, Christoph Friedburg, Anika Bieg, Martin Gliem, Peter Charbel Issa, Frank G. Holz, Shahid M. Baig, Yorck Hellenbroich, Alberto Galvez, Konrad Platzer, Bernd Wollnik, Nadja Laddach, Saeed Reza Ghaffari, Maryam Rafati, Elke Botzenhart, Sigrid Tinschert, Doris Börger, Axel Bohring, Julia Schreml, Stefani Körtge-Jung, Chayim Schell-Apacik, Khadijah Bakur, Jumana Y. Al-Aama, Teresa Neuhann, Peter Herkenrath, Gudrun Nürnberg, Peter Nürnberg, John S. Davis, Andreas Gal, Carsten Bergmann, Birgit Lorenz, Hanno J. Bolz

published 12 Nov 2013

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SomatiCA: Identifying, Characterizing and Quantifying Somatic Copy Number Aberrations from Cancer Genome Sequencing Data

Mengjie Chen, Murat Gunel, Hongyu Zhao

published 12 Nov 2013

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Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

Penelope K. Lindeque, Helen E. Parry, Rachel A. Harmer, Paul J. Somerfield, Angus Atkinson

published 07 Nov 2013

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Validation of SNP Allele Frequencies Determined by Pooled Next-Generation Sequencing in Natural Populations of a Non-Model Plant Species

Christian Rellstab, Stefan Zoller, Andrew Tedder, Felix Gugerli, Martin C. Fischer

published 07 Nov 2013

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