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Next-generation sequencing

Comparison of Metatranscriptomic Samples Based on k-Tuple Frequencies

Ying Wang, Lin Liu, [ ... ], Fengzhu Sun

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

Cristian Del Fabbro, Simone Scalabrin, Michele Morgante, Federico M. Giorgi

Next-Generation Sequencing of Lung Cancer EGFR Exons 18-21 Allows Effective Molecular Diagnosis of Small Routine Samples (Cytology and Biopsy)

Dario de Biase, Michela Visani, [ ... ], Giovanni Tallini

Inferring Short-Range Linkage Information from Sequencing Chromatograms

Bastian Beggel, Maria Neumann-Fraune, [ ... ], Thomas Lengauer

SoftSearch: Integration of Multiple Sequence Features to Identify Breakpoints of Structural Variations

Steven N. Hart, Vivekananda Sarangi, [ ... ], Jean-Pierre A. Kocher

Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

Martin Kemler, Jeff Garnas, [ ... ], Bernard Slippers

SRComp: Short Read Sequence Compression Using Burstsort and Elias Omega Coding

Jeremy John Selva, Xin Chen

RNA-Seq Transcriptome Profiling of Upland Cotton (Gossypium hirsutum L.) Root Tissue under Water-Deficit Stress

Megan J. Bowman, Wonkeun Park, [ ... ], B. Todd Campbell

Genomic DNA Enrichment Using Sequence Capture Microarrays: a Novel Approach to Discover Sequence Nucleotide Polymorphisms (SNP) in Brassica napus L

Wayne E. Clarke, Isobel A. Parkin, [ ... ], Federico L. Iniguez-Luy

Increasing the Yield in Targeted Next-Generation Sequencing by Implicating CNV Analysis, Non-Coding Exons and the Overall Variant Load: The Example of Retinal Dystrophies

Tobias Eisenberger, Christine Neuhaus, [ ... ], Hanno J. Bolz

SomatiCA: Identifying, Characterizing and Quantifying Somatic Copy Number Aberrations from Cancer Genome Sequencing Data

Mengjie Chen, Murat Gunel, Hongyu Zhao

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

Penelope K. Lindeque, Helen E. Parry, [ ... ], Angus Atkinson

Validation of SNP Allele Frequencies Determined by Pooled Next-Generation Sequencing in Natural Populations of a Non-Model Plant Species

Christian Rellstab, Stefan Zoller, [ ... ], Martin C. Fischer

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