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Next-generation sequencing

Microbial profile comparisons of saliva, pooled and site-specific subgingival samples in periodontitis patients

Daniel Belstrøm, Maria Lynn Sembler-Møller, Maria Anastasia Grande, Nikolai Kirkby, Sean Liam Cotton, Bruce J. Paster, Palle Holmstrup

published 11 Aug 2017

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Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data

Bo-Young Kim, Jung Hoon Park, Hye-Yeong Jo, Soo Kyung Koo, Mi-Hyun Park

published 09 Aug 2017

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Characterization of the genome of a phylogenetically distinct tospovirus and its interactions with the local lesion-induced host Chenopodium quinoa by whole-transcriptome analyses

Wan-Chen Chou, Shih-Shun Lin, Shyi-Dong Yeh, Siang-Ling Li, Ying-Che Peng, Ya-Hsu Fan, Tsung-Chi Chen

published 03 Aug 2017

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Additional value of screening for minor genes and copy number variants in hypertrophic cardiomyopathy

Irene Mademont-Soler, Jesus Mates, Raquel Yotti, Maria Angeles Espinosa, Alexandra Pérez-Serra, Ana Isabel Fernandez-Avila, Monica Coll, Irene Méndez, Anna Iglesias, Bernat del Olmo, Helena Riuró, Sofía Cuenca, Catarina Allegue, Oscar Campuzano, Ferran Picó, Carles Ferrer-Costa, Patricia Álvarez, Sergio Castillo, Pablo Garcia-Pavia, Esther Gonzalez-Lopez, Laura Padron-Barthe, Aranzazu Díaz de Bustamante, María Teresa Darnaude, José Ignacio González-Hevia, Josep Brugada, Francisco Fernandez-Aviles, Ramon Brugada

published 03 Aug 2017

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DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing

Byunghan Lee, Taesup Moon, Sungroh Yoon, Tsachy Weissman

published 27 Jul 2017

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First identification of a recombinant form of hepatitis C virus in Austrian patients by full-genome next generation sequencing

Evelyn Stelzl, Bernhard Haas, Bernd Bauer, Sherry Zhang, Ellen H. Fiss, Grantland Hillman, Aaron T. Hamilton, Rochak Mehta, Marintha L. Heil, Ed G. Marins, Brigitte I. Santner, Harald H. Kessler

published 25 Jul 2017

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Investigation of horizontal gene transfer of pathogenicity islands in Escherichia coli using next-generation sequencing

Maxim Messerer, Wolfgang Fischer, Sören Schubert

published 21 Jul 2017

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New library construction method for single-cell genomes

Larry Xi, Alexander Belyaev, Sandra Spurgeon, Xiaohui Wang, Haibiao Gong, Robert Aboukhalil, Richard Fekete

published 19 Jul 2017

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Taxa-area relationship of aquatic fungi on deciduous leaves

Sofia Duarte, Fernanda Cássio, Cláudia Pascoal, Felix Bärlocher

published 18 Jul 2017

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Increased genetic diversity and prevalence of co-infection with Trypanosoma spp. in koalas (Phascolarctos cinereus) and their ticks identified using next-generation sequencing (NGS)

Amanda D. Barbosa, Alexander W. Gofton, Andrea Paparini, Annachiara Codello, Telleasha Greay, Amber Gillett, Kristin Warren, Peter Irwin, Una Ryan

published 13 Jul 2017

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Amplification of overlapping DNA amplicons in a single-tube multiplex PCR for targeted next-generation sequencing of BRCA1 and BRCA2

Desiree Schenk, Gang Song, Yue Ke, Zhaohui Wang

published 12 Jul 2017

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A viral metagenomic approach on a non-metagenomic experiment: Mining next generation sequencing datasets from pig DNA identified several porcine parvoviruses for a retrospective evaluation of viral infections

Samuele Bovo, Gianluca Mazzoni, Anisa Ribani, Valerio Joe Utzeri, Francesca Bertolini, Giuseppina Schiavo, Luca Fontanesi

published 29 Jun 2017

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Genetic basis of calcifying cystic odontogenic tumors

Akane Yukimori, Yu Oikawa, Kei-ichi Morita, Chi Thi Kim Nguyen, Hiroyuki Harada, Satoshi Yamaguchi, Kou Kayamori, Akira Yamaguchi, Tohru Ikeda, Kei Sakamoto

published 28 Jun 2017

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