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Next-generation sequencing

Rare and common variants of APOB and PCSK9 in Korean patients with extremely low low-density lipoprotein-cholesterol levels

Chan Joo Lee, Yunbeom Lee, Sungha Park, Seok-Min Kang, Yangsoo Jang, Ji Hyun Lee, Sang-Hak Lee

published 16 Oct 2017

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Novel genes and mutations in patients affected by recurrent pregnancy loss

Paula Quintero-Ronderos, Eric Mercier, Michiko Fukuda, Ronald González, Carlos Fernando Suárez, Manuel Alfonso Patarroyo, Daniel Vaiman, Jean-Christophe Gris, Paul Laissue

published 10 Oct 2017

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Molecular subtype specific efficacy of MEK inhibitors in pancreatic cancers

Diána Brauswetter, Bianka Gurbi, Attila Varga, Edit Várkondi, Richárd Schwab, Gábor Bánhegyi, Orsolya Fábián, György Kéri, István Vályi-Nagy, István Peták

published 28 Sep 2017

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Gene selection tool (GST): A R-based tool for genetic disorders based on the sliding-window proportion test using whole-exome sequencing data

Sugi Lee, Minah Jung, Jaeeun Jung, Kunhyang Park, Jea-Woon Ryu, Jeongkil Kim, Dae-soo Kim

published 28 Sep 2017

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Germline and somatic mutations in cortical malformations: Molecular defects in Argentinean patients with neuronal migration disorders

Dolores González-Morón, Sebastián Vishnopolska, Damián Consalvo, Nancy Medina, Marcelo Marti, Marta Córdoba, Cecilia Vazquez-Dusefante, Santiago Claverie, Sergio Alejandro Rodríguez-Quiroga, Patricia Vega, Walter Silva, Silvia Kochen, Marcelo Andrés Kauffman

published 27 Sep 2017

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Sanger and Next-Generation Sequencing data for characterization of CTL epitopes in archived HIV-1 proviral DNA

Camille Tumiotto, Lionel Riviere, Pantxika Bellecave, Patricia Recordon-Pinson, Alice Vilain-Parce, Gwenda-Line Guidicelli, Hervé Fleury, Provir/Latitude 45 collaborating group

published 21 Sep 2017

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Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA

Konstantin A. Blagodatskikh, Vladimir M. Kramarov, Ekaterina V. Barsova, Alexey V. Garkovenko, Dmitriy S. Shcherbo, Andrew A. Shelenkov, Vera V. Ustinova, Maria R. Tokarenko, Simon C. Baker, Tatiana V. Kramarova, Konstantin B. Ignatov

published 11 Sep 2017

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SEXCMD: Development and validation of sex marker sequences for whole-exome/genome and RNA sequencing

Seongmun Jeong, Jiwoong Kim, Won Park, Hongmin Jeon, Namshin Kim

published 08 Sep 2017

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Cardiac transcriptome profiling of diabetic Akita mice using microarray and next generation sequencing

Varun Kesherwani, Hamid R. Shahshahan, Paras K. Mishra

published 24 Aug 2017

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ChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequences

Fwu-Shan Shieh, Patrick Jongeneel, Jamin D. Steffen, Selena Lin, Surbhi Jain, Wei Song, Ying-Hsiu Su

published 22 Aug 2017

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Microbial profile comparisons of saliva, pooled and site-specific subgingival samples in periodontitis patients

Daniel Belstrøm, Maria Lynn Sembler-Møller, Maria Anastasia Grande, Nikolai Kirkby, Sean Liam Cotton, Bruce J. Paster, Palle Holmstrup

published 11 Aug 2017

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Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data

Bo-Young Kim, Jung Hoon Park, Hye-Yeong Jo, Soo Kyung Koo, Mi-Hyun Park

published 09 Aug 2017

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Characterization of the genome of a phylogenetically distinct tospovirus and its interactions with the local lesion-induced host Chenopodium quinoa by whole-transcriptome analyses

Wan-Chen Chou, Shih-Shun Lin, Shyi-Dong Yeh, Siang-Ling Li, Ying-Che Peng, Ya-Hsu Fan, Tsung-Chi Chen

published 03 Aug 2017

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