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Next-generation sequencing

ERASE-Seq: Leveraging replicate measurements to enhance ultralow frequency variant detection in NGS data

Nick Kamps-Hughes, Andrew McUsic, Laurie Kurihara, Timothy T. Harkins, Prithwish Pal, Claire Ray, Cristian Ionescu-Zanetti

published 09 Apr 2018

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Frequency of occurrence of HIV-1 dual infection in a Belgian MSM population

Laura Hebberecht, Leen Vancoillie, Marlies Schauvliege, Delfien Staelens, Kenny Dauwe, Virginie Mortier, Chris Verhofstede

published 06 Apr 2018

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Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples

Eric Bonnet, Marie-Laure Moutet, Céline Baulard, Delphine Bacq-Daian, Florian Sandron, Lilia Mesrob, Bertrand Fin, Marc Delépine, Marie-Ange Palomares, Claire Jubin, Hélène Blanché, Vincent Meyer, Anne Boland, Robert Olaso, Jean-François Deleuze

published 05 Apr 2018

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Identification of HLA-DRB1 association to adalimumab immunogenicity

Mohan Liu, Jacob Degner, Justin Wade Davis, Kenneth B. Idler, Ahmed Nader, Nael M. Mostafa, Jeffrey F. Waring

published 03 Apr 2018

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Next-generation sequencing analysis of a cluster of hepatitis C virus infections in a haematology and oncology center

Kamila Caraballo Cortes, Magdalena Rosińska, Maciej Janiak, Małgorzata Stępień, Osvaldo Zagordi, Karol Perlejewski, Sylwia Osuch, Agnieszka Pawełczyk, Iwona Bukowska-Ośko, Rafał Płoski, Piotr Grabarczyk, Tomasz Laskus, Marek Radkowski

published 22 Mar 2018

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Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach

Albertas Dvirnas, Christoffer Pichler, Callum L. Stewart, Saair Quaderi, Lena K. Nyberg, Vilhelm Müller, Santosh Kumar Bikkarolla, Erik Kristiansson, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson

published 09 Mar 2018

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Full-length genome sequences of porcine epidemic diarrhoea virus strain CV777; Use of NGS to analyse genomic and sub-genomic RNAs

Thomas Bruun Rasmussen, Maria Beatrice Boniotti, Alice Papetti, Béatrice Grasland, Jean-Pierre Frossard, Akbar Dastjerdi, Marcel Hulst, Dennis Hanke, Anne Pohlmann, Sandra Blome, Wim H. M. van der Poel, Falko Steinbach, Yannick Blanchard, Antonio Lavazza, Anette Bøtner, Graham J. Belsham

published 01 Mar 2018

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PuLSE: Quality control and quantification of peptide sequences explored by phage display libraries

Steven Shave, Stefan Mann, Joanna Koszela, Alastair Kerr, Manfred Auer

published 23 Feb 2018

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Microbial diversity and component variation in Xiaguan Tuo Tea during pile fermentation

Haizhou Li, Min Li, Xinrui Yang, Xin Gui, Guofeng Chen, Jiuyun Chu, Xingwang He, Weitao Wang, Feng Han, Ping Li

published 20 Feb 2018

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Selective identification of somatic mutations in pancreatic cancer cells through a combination of next-generation sequencing of plasma DNA using molecular barcodes and a bioinformatic variant filter

Yoji Kukita, Kazuyoshi Ohkawa, Ryoji Takada, Hiroyuki Uehara, Kazuhiro Katayama, Kikuya Kato

published 16 Feb 2018

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Species-specific regulation of angiogenesis by glucocorticoids reveals contrasting effects on inflammatory and angiogenic pathways

Ruth Morgan, John Keen, Daniel Halligan, Alan O’Callaghan, Ruth Andrew, Dawn Livingstone, Amber Abernethie, Giorgia Maltese, Brian Walker, Patrick Hadoke

published 15 Feb 2018

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Target discovery screens using pooled shRNA libraries and next-generation sequencing: A model workflow and analytical algorithm

Christiane Schaefer, Nikhil Mallela, Jochen Seggewiß, Birgit Lechtape, Heymut Omran, Uta Dirksen, Eberhard Korsching, Jenny Potratz

published 31 Jan 2018

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Aptamers as biomarkers for neurological disorders. Proof of concept in transgenic mice

Soizic Lecocq, Katia Spinella, Bruno Dubois, Simone Lista, Harald Hampel, Gregory Penner

published 05 Jan 2018

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