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Next-generation sequencing

Sequencing of Treponema pallidum subsp. pallidum from isolate UZ1974 using Anti-Treponemal Antibodies Enrichment: First complete whole genome sequence obtained directly from human clinical material

Linda Grillová, Lorenzo Giacani, Lenka Mikalová, Michal Strouhal, Radim Strnadel, Christina Marra, Arturo Centurion-Lara, Lucy Poveda, Giancarlo Russo, Darina Čejková, Vladimír Vašků, Jan Oppelt, David Šmajs

published 21 Aug 2018

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Evaluating freshwater macroinvertebrates from eDNA metabarcoding: A river Nalón case study

Sara Fernández, Saúl Rodríguez, Jose L. Martínez, Yaisel J. Borrell, Alba Ardura, Eva García-Vázquez

published 08 Aug 2018

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Combination of a six microRNA expression profile with four clinicopathological factors for response prediction of systemic treatment in patients with advanced colorectal cancer

Maarten Neerincx, Dennis Poel, Daoud L. S. Sie, Nicole C. T. van Grieken, Ram C. Shankaraiah, Floor S. W. van der Wolf - de Lijster, Jan-Hein T. M. van Waesberghe, Jan-Dirk Burggraaf, Paul P. Eijk, Cornelis Verhoef, Bauke Ylstra, Gerrit A. Meijer, Mark A. van de Wiel, Tineke E. Buffart, Henk M. W. Verheul

published 03 Aug 2018

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Transcriptional analysis of viral mRNAs reveals common transcription patterns in cells infected by five different filoviruses

César G. Albariño, Lisa Wiggleton Guerrero, Ayan K. Chakrabarti, Stuart T. Nichol

published 02 Aug 2018

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An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches

Marcelo R. V. Diniz, Ana L. B. Paiva, Clara Guerra-Duarte, Milton Y. Nishiyama Jr, Mauricio A. Mudadu, Ursula de Oliveira, Márcia H. Borges, John R. Yates, Inácio de L. Junqueira-de-Azevedo

published 01 Aug 2018

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HSRA: Hadoop-based spliced read aligner for RNA sequencing data

Roberto R. Expósito, Jorge González-Domínguez, Juan Touriño

published 31 Jul 2018

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Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing

Sabine Hellwig, David A. Nix, Keith M. Gligorich, John M. O’Shea, Alun Thomas, Carrie L. Fuertes, Preetida J. Bhetariya, Gabor T. Marth, Mary P. Bronner, Hunter R. Underhill

published 25 Jul 2018

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A new targeted capture method using bacterial artificial chromosome (BAC) libraries as baits for sequencing relatively large genes

Kae Koganebuchi, Takashi Gakuhari, Hirohiko Takeshima, Kimitoshi Sato, Kiyotaka Fujii, Toshihiro Kumabe, Satoshi Kasagi, Takehiro Sato, Atsushi Tajima, Hiroki Shibata, Motoyuki Ogawa, Hiroki Oota

published 12 Jul 2018

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High-throughput evaluation of T7 promoter variants using biased randomization and DNA barcoding

Ryo Komura, Wataru Aoki, Keisuke Motone, Atsushi Satomura, Mitsuyoshi Ueda

published 07 May 2018

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Performance of next-generation sequencing on small tumor specimens and/or low tumor content samples using a commercially available platform

Scott Morris, Janakiraman Subramanian, Esma Gel, George Runger, Eric Thompson, David Mallery, Glen Weiss

published 27 Apr 2018

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A remark on copy number variation detection methods

Shuo Li, Xialiang Dou, Ruiqi Gao, Xinzhou Ge, Minping Qian, Lin Wan

published 27 Apr 2018

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Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis

Daniel Hagenfeld, Raphael Koch, Sebastian Jünemann, Karola Prior, Inga Harks, Peter Eickholz, Thomas Hoffmann, Ti-Sun Kim, Thomas Kocher, Jörg Meyle, Doğan Kaner, Ulrich Schlagenhauf, Benjamin Ehmke, Dag Harmsen

published 18 Apr 2018

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Cost-benefit analysis of introducing next-generation sequencing (metagenomic) pathogen testing in the setting of pyrexia of unknown origin

Jia Hui Chai, Chun Kiat Lee, Hong Kai Lee, Nicholas Wong, Kahwee Teo, Chuen Seng Tan, Praveen Thokala, Julian Wei-Tze Tang, Paul Anantharajah Tambyah, Vernon Min Sen Oh, Tze Ping Loh, Joanne Yoong

published 17 Apr 2018

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