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Next-generation sequencing

Validation of publicly-available software used in analyzing NGS data for HIV-1 drug resistance mutations and transmission networks in a Washington, DC, Cohort

Kamwing Jair, Chase D. McCann, Harrison Reed, Amanda D. Castel, Marcos Pérez-Losada, Brittany Wilbourn, Alan E. Greenberg, Jeanne A. Jordan, the DC Cohort Executive Committee

published 09 Apr 2019

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Fragmentation Through Polymerization (FTP): A new method to fragment DNA for next-generation sequencing

Konstantin B. Ignatov, Konstantin A. Blagodatskikh, Dmitry S. Shcherbo, Tatiana V. Kramarova, Yulia A. Monakhova, Vladimir M. Kramarov

published 01 Apr 2019

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Baseline identification of clonal V(D)J sequences for DNA-based minimal residual disease detection in multiple myeloma

Even H. Rustad, Malin Hultcrantz, Venkata D. Yellapantula, Theresia Akhlaghi, Caleb Ho, Maria E. Arcila, Mikhail Roshal, Akshar Patel, Denise Chen, Sean M. Devlin, Austin Jacobsen, Ying Huang, Jeffrey E. Miller, Elli Papaemmanuil, Ola Landgren

published 22 Mar 2019

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Targeted next generation sequencing can serve as an alternative to conventional tests in myeloid neoplasms

Borahm Kim, Hyeonah Lee, Jieun Jang, Soo-Jeong Kim, Seung-Tae Lee, June-Won Cheong, Chuhl Joo Lyu, Yoo Hong Min, Jong Rak Choi

published 06 Mar 2019

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HCV transmission in high-risk communities in Bulgaria

Lilia Ganova-Raeva, Zoya Dimitrova, Ivailo Alexiev, Lili Punkova, Amanda Sue, Guo-liang Xia, Anna Gancheva, Reneta Dimitrova, Asya Kostadinova, Elitsa Golkocheva-Markova, Yury Khudyakov

published 05 Mar 2019

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Integrated routine workflow using next-generation sequencing and a fully-automated platform for the detection of KRAS, NRAS and BRAF mutations in formalin-fixed paraffin embedded samples with poor DNA quality in patients with colorectal carcinoma

Claire Franczak, Ludovic Dubouis, Pauline Gilson, Marie Husson, Marie Rouyer, Jessica Demange, Agnès Leroux, Jean-Louis Merlin, Alexandre Harlé

published 27 Feb 2019

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Provir/Latitude 45 study: A step towards a multi-epitopic CTL vaccine designed on archived HIV-1 DNA and according to dominant HLA I alleles

Camille Tumiotto, Bruna M. Alves, Patricia Recordon-Pinson, Marine Jourdain, Pantxika Bellecave, Gwenda-Line Guidicelli, Jonathan Visentin, Fabrice Bonnet, Mojdan Hessamfar, Didier Neau, Jorge Sanchez, Christian Brander, Mohammad Sajadi, Lindsay Eyzaguirre, Esmeralda A. Soares, Jean-Pierre Routy, Marcelo A. Soares, Hervé Fleury

published 27 Feb 2019

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Viral infection detection using metagenomics technology in six poultry farms of eastern China

Yuan Qiu, Suchun Wang, Baoxu Huang, Huanxiang Zhong, Zihao Pan, Qingye Zhuang, Cheng Peng, Guangyu Hou, Kaicheng Wang

published 20 Feb 2019

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Presence, persistence and effects of pre-treatment HIV-1 drug resistance variants detected using next generation sequencing: A Retrospective longitudinal study from rural coastal Kenya

Amin S. Hassan, David F. Bibby, Shalton M. Mwaringa, Clara A. Agutu, Kennedy K. Ndirangu, Eduard J. Sanders, Patricia A. Cane, Jean L. Mbisa, James A. Berkley

published 13 Feb 2019

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Revisiting aneuploidy profile of surgically retrieved spermatozoa by whole exome sequencing molecular karyotype

Stephanie Cheung, Peter N. Schlegel, Zev Rosenwaks, Gianpiero D. Palermo

published 04 Jan 2019

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First evaluation of the Next-Generation Sequencing platform for the detection of HIV-1 drug resistance mutations in Belgium

Géraldine Dessilly, Léonie Goeminne, Anne-thérèse Vandenbroucke, Francois E. Dufrasne, Anandi Martin, Benoît Kabamba-Mukabi

published 31 Dec 2018

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Molecular and clinical analysis of 27 German patients with Leber congenital amaurosis

Nicole Weisschuh, Britta Feldhaus, Muhammad Imran Khan, Frans P. M. Cremers, Susanne Kohl, Bernd Wissinger, Ditta Zobor

published 21 Dec 2018

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A user-friendly platform for yeast two-hybrid library screening using next generation sequencing

Marie-Laure Erffelinck, Bianca Ribeiro, Maria Perassolo, Laurens Pauwels, Jacob Pollier, Veronique Storme, Alain Goossens

published 21 Dec 2018

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