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Next-generation sequencing

EasyParallel: A GUI platform for parallelization of STRUCTURE and NEWHYBRIDS analyses

Honggang Zhao, Benjamin Beck, Adam Fuller, Eric Peatman

Performance of a multiplexed amplicon-based next-generation sequencing assay for HLA typing

Chang Liu, Brian F. Duffy, [ ... ], Bijal A. Parikh

Detection of microbial cell-free DNA in maternal and umbilical cord plasma in patients with chorioamnionitis using next generation sequencing

Russell G. Witt, Lily Blair, [ ... ], Tippi C. Mackenzie

CCNB2 and AURKA overexpression may cause atypical mitosis in Japanese cortisol-producing adrenocortical carcinoma with TP53 somatic variant

Akira Ikeya, Mitsuko Nakashima, [ ... ], Yutaka Oki

Identification of genomic insertion and flanking sequences of the transgenic drought-tolerant maize line “SbSNAC1-382” using the single-molecule real-time (SMRT) sequencing method

Tingru Zeng, Dengfeng Zhang, [ ... ], Tianyu Wang

A Zipf-plot based normalization method for high-throughput RNA-seq data

Bin Wang

Analysis of unusual and signature APOBEC-mutations in HIV-1 pol next-generation sequences

Philip L. Tzou, Sergei L. Kosakovsky Pond, [ ... ], Robert W. Shafer

The stochastic nature of errors in next-generation sequencing of circulating cell-free DNA

David A. Nix, Sabine Hellwig, [ ... ], Hunter R. Underhill

Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Marjolein J. Poen, Anne Pohlmann, [ ... ], Richard J. Ellis

Assessment of the clinical utility of four NGS panels in myeloid malignancies. Suggestions for NGS panel choice or design

Almudena Aguilera-Diaz, Iria Vazquez, [ ... ], María José Calasanz

Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling

Ching Jian, Panu Luukkonen, [ ... ], Katri Korpela

Clinical feasibility of NGS liquid biopsy analysis in NSCLC patients

Eirini Papadopoulou, Nikolaos Tsoulos, [ ... ], George Nasioulas

SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework

Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars

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