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Next-generation sequencing

Medical oncologists’ perspectives of the Veterans Affairs National Precision Oncology Program

Vishal Vashistha, Pradeep J. Poonnen, Jane L. Snowdon, Halcyon G. Skinner, Victoria McCaffrey, Neil L. Spector, Bradley Hintze, Jill E. Duffy, Dilhan Weeraratne, Gretchen P. Jackson, Michael J. Kelley, Vimla L. Patel

published 24 Jul 2020

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Results of targeted next-generation sequencing in children with cystic kidney diseases often change the clinical diagnosis

Lena Obeidova, Tomas Seeman, Filip Fencl, Kveta Blahova, Jan Hojny, Veronika Elisakova, Jana Reiterova, Jitka Stekrova

published 23 Jun 2020

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Detection of hepatitis B virus pre-S mutants in plasma by a next-generation sequencing-based platform determines their patterns in liver tissues

Chiao-Fang Teng, Hung-Wen Tsai, Tsai-Chung Li, Ting Wang, John Wang, Woei-Cherng Shyu, Han-Chieh Wu, Ih-Jen Su, Long-Bin Jeng

published 19 Jun 2020

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Integrative analysis of gene expression and alternative splicing in microalgae grown under heterotrophic condition

Bahman Panahi, Mohammad Amin Hejazi

published 17 Jun 2020

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Outcomes in oncogenic-addicted advanced NSCLC patients with actionable mutations identified by liquid biopsy genomic profiling using a tagged amplicon-based NGS assay

Jordi Remon, Aurelie Swalduz, David Planchard, Sandra Ortiz-Cuaran, Laura Mezquita, Ludovic Lacroix, Cecile Jovelet, Etienne Rouleau, Camille Leonce, Frank De Kievit, Clive Morris, Greg Jones, Kelly Mercier, Karen Howarth, Emma Green, Maurice Pérol, Pierre Saintigny, Benjamin Besse

published 11 Jun 2020

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Liquid biopsy-based tumor profiling for metastatic colorectal cancer patients with ultra-deep targeted sequencing

Jun-Kyu Kang, Sunghoon Heo, Hwang-Phill Kim, Sang-Hyun Song, Hongseok Yun, Sae-Won Han, Gyeong Hoon Kang, Duhee Bang, Tae-You Kim

published 07 May 2020

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Selection and exploitation of prevalent, tandemly repeated genomic targets for improved real-time PCR-based detection of Wuchereria bancrofti and Plasmodium falciparum in mosquitoes

Michael F. Zulch, Nils Pilotte, Jessica R. Grant, Corrado Minetti, Lisa J. Reimer, Steven A. Williams

published 01 May 2020

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Genotyping by multiplexed sequencing (GMS): A customizable platform for genomic selection

Travis M. Ruff, Elliott J. Marston, Jonathan D. Eagle, Sajal R. Sthapit, Marcus A. Hooker, Daniel Z. Skinner, Deven R. See

published 01 May 2020

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EasyParallel: A GUI platform for parallelization of STRUCTURE and NEWHYBRIDS analyses

Honggang Zhao, Benjamin Beck, Adam Fuller, Eric Peatman

published 24 Apr 2020

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Performance of a multiplexed amplicon-based next-generation sequencing assay for HLA typing

Chang Liu, Brian F. Duffy, Eric T. Weimer, Maureen C. Montgomery, Jo-Ellen Jennemann, Rachel Hill, Donna Phelan, Lindsay Lay, Bijal A. Parikh

published 23 Apr 2020

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Detection of microbial cell-free DNA in maternal and umbilical cord plasma in patients with chorioamnionitis using next generation sequencing

Russell G. Witt, Lily Blair, Michela Frascoli, Michael J. Rosen, Quoc-Hung Nguyen, Sivan Bercovici, Simona Zompi, Roberto Romero, Tippi C. Mackenzie

published 15 Apr 2020

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CCNB2 and AURKA overexpression may cause atypical mitosis in Japanese cortisol-producing adrenocortical carcinoma with TP53 somatic variant

Akira Ikeya, Mitsuko Nakashima, Miho Yamashita, Keisuke Kakizawa, Yuta Okawa, Hirotomo Saitsu, Shigekazu Sasaki, Hironobu Sasano, Takafumi Suda, Yutaka Oki

published 14 Apr 2020

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Identification of genomic insertion and flanking sequences of the transgenic drought-tolerant maize line “SbSNAC1-382” using the single-molecule real-time (SMRT) sequencing method

Tingru Zeng, Dengfeng Zhang, Yongxiang Li, Chunhui Li, Xuyang Liu, Yunsu Shi, Yanchun Song, Yu Li, Tianyu Wang

published 10 Apr 2020

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