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Network motifs

ProteinWeaver: A webtool to visualize ontology-annotated protein networks

Oliver Anderson, Altaf Barelvi, Aden O’Brien, Ainsley Norman, Iris Jan, Anna Ritz

published 05 Sep 2025

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Generating random graphs with prescribed graphlet frequency bounds derived from probabilistic networks

Bram Mornie, Didier Colle, Pieter Audenaert, Mario Pickavet

published 26 Aug 2025

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Machine learning approaches for predicting the link of the global trade network of liquefied natural gas

Pei Zhao, Hao Song, Guang Ling

published 30 Jul 2025

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Dissecting the role of bHLH transcription factors in the potato spindle tuber viroid (PSTVd)-tomato pathosystem using network approaches

Katia Aviña-Padilla, Octavio Zambada-Moreno, Marco A. Jimenez-Limas, Rosemarie W. Hammond, Maribel Hernández-Rosales

published 07 May 2025

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A minimalist computational model of slice hippocampal circuitry based on Neuronify for teaching neuroscience

Lucas Longo, Thiago Lima, Maria Clara Bila, João Brogin, Jean Faber

published 29 Apr 2025

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Are you with me? Co-occurrence tests from community ecology can identify positive and negative epistasis between inversions in Mimulus guttatus

Luis J. Madrigal-Roca, John K. Kelly

published 28 Apr 2025

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Familiarity of an environment prevents song suppression in isolated zebra finches

Anja T. Zai, Diana I. Rodrigues, Anna E. Stepien, Corinna Lorenz, Nicolas Giret, Iris Adam, Richard H. R. Hahnloser

published 09 Jan 2025

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Stochastic step-wise feature selection for Exponential Random Graph Models (ERGMs)

Helal El-Zaatari, Fei Yu, Michael R. Kosorok

published 17 Dec 2024

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Phenotype selection due to mutational robustness

Macoto Kikuchi

published 18 Nov 2024

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Optimizing the robustness of higher-low order coupled networks

Chunlin Zheng, Yonglin Hu, Chengjun Zhang, Wenbin Yu, Hui Yao, Yangsong Li, Cheng Fan, Xiaolin Cen

published 14 Mar 2024

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Evolution of the global terrorist organizational cooperation network

Donghao Cui, Chaomin Ou, Xin Lu

published 22 Jan 2024

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Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3

Bjørn André Bredesen-Aa, Marc Rehmsmeier

published 09 Sep 2022

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Cryptoasset networks: Flows and regular players in Bitcoin and XRP

Hideaki Aoyama, Yoshi Fujiwara, Yoshimasa Hidaka, Yuichi Ikeda

published 22 Aug 2022

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