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Network analysis

Cross-Platform Microarray Data Normalisation for Regulatory Network Inference

Alina Sîrbu, Heather J. Ruskin, Martin Crane

Modeling the Spread of Vector-Borne Diseases on Bipartite Networks

Donal Bisanzio, Luigi Bertolotti, [ ... ], Paolo Provero

Pre-Clinical Drug Prioritization via Prognosis-Guided Genetic Interaction Networks

Jianghui Xiong, Juan Liu, [ ... ], Shanguang Chen

Phosphoproteomics-Based Modeling Defines the Regulatory Mechanism Underlying Aberrant EGFR Signaling

Shinya Tasaki, Masao Nagasaki, [ ... ], Masaaki Oyama

Optimizing Topological Cascade Resilience Based on the Structure of Terrorist Networks

Alexander Gutfraind

A Scale-Free Structure Prior for Graphical Models with Applications in Functional Genomics

Paul Sheridan, Takeshi Kamimura, Hidetoshi Shimodaira

HiNO: An Approach for Inferring Hierarchical Organization from Regulatory Networks

Mara L. Hartsperger, Robert Strache, Volker Stümpflen

Loss of ‘Small-World’ Networks in Alzheimer's Disease: Graph Analysis of fMRI Resting-State Functional Connectivity

Ernesto J. Sanz-Arigita, Menno M. Schoonheim, [ ... ], Cornelis J. Stam

MicroRNA-Integrated and Network-Embedded Gene Selection with Diffusion Distance

Di Huang, Xiaobo Zhou, [ ... ], Stephen T. C. Wong

Comparing Brain Networks of Different Size and Connectivity Density Using Graph Theory

Bernadette C. M. van Wijk, Cornelis J. Stam, Andreas Daffertshofer

Yeast Biological Networks Unfold the Interplay of Antioxidants, Genome and Phenotype, and Reveal a Novel Regulator of the Oxidative Stress Response

Jose M. Otero, Manos A. Papadakis, [ ... ], Gianni Panagiotou

DREAM4: Combining Genetic and Dynamic Information to Identify Biological Networks and Dynamical Models

Alex Greenfield, Aviv Madar, Harry Ostrer, Richard Bonneau

Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks

Recep Colak, Flavia Moser, [ ... ], Martin Ester

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