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Network analysis

Loss of ‘Small-World’ Networks in Alzheimer's Disease: Graph Analysis of fMRI Resting-State Functional Connectivity

Ernesto J. Sanz-Arigita, Menno M. Schoonheim, Jessica S. Damoiseaux, Serge A. R. B. Rombouts, Erik Maris, Frederik Barkhof, Philip Scheltens, Cornelis J. Stam

published 01 Nov 2010

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MicroRNA-Integrated and Network-Embedded Gene Selection with Diffusion Distance

Di Huang, Xiaobo Zhou, Christopher J. Lyon, Willa A. Hsueh, Stephen T. C. Wong

published 29 Oct 2010

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Comparing Brain Networks of Different Size and Connectivity Density Using Graph Theory

Bernadette C. M. van Wijk, Cornelis J. Stam, Andreas Daffertshofer

published 28 Oct 2010

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Yeast Biological Networks Unfold the Interplay of Antioxidants, Genome and Phenotype, and Reveal a Novel Regulator of the Oxidative Stress Response

Jose M. Otero, Manos A. Papadakis, D. B. R. K. Gupta Udatha, Jens Nielsen, Gianni Panagiotou

published 25 Oct 2010

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DREAM4: Combining Genetic and Dynamic Information to Identify Biological Networks and Dynamical Models

Alex Greenfield, Aviv Madar, Harry Ostrer, Richard Bonneau

published 25 Oct 2010

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Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks

Recep Colak, Flavia Moser, Jeffrey Shih-Chieh Chu, Alexander Schönhuth, Nansheng Chen, Martin Ester

published 25 Oct 2010

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Early Embryonic Gene Expression Profiling of Zebrafish Prion Protein (Prp2) Morphants

Rasoul Nourizadeh-Lillabadi, Jacob Seilø Torgersen, Olav Vestrheim, Melanie König, Peter Aleström, Mohasina Syed

published 22 Oct 2010

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Intertwining Threshold Settings, Biological Data and Database Knowledge to Optimize the Selection of Differentially Expressed Genes from Microarray

Paul Chuchana, Philippe Holzmuller, Frederic Vezilier, David Berthier, Isabelle Chantal, Dany Severac, Jean Loup Lemesre, Gerard Cuny, Philippe Nirdé, Bruno Bucheton

published 20 Oct 2010

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DEGAS: De Novo Discovery of Dysregulated Pathways in Human Diseases

Igor Ulitsky, Akshay Krishnamurthy, Richard M. Karp, Ron Shamir

published 19 Oct 2010

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Multiple Routes and Milestones in the Folding of HIV–1 Protease Monomer

Massimiliano Bonomi, Alessandro Barducci, Francesco L. Gervasio, Michele Parrinello

published 13 Oct 2010

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Dynamics of the Drosophila Circadian Clock: Theoretical Anti-Jitter Network and Controlled Chaos

Hassan M. Fathallah-Shaykh

published 13 Oct 2010

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Inference of Surface Membrane Factors of HIV-1 Infection through Functional Interaction Networks

Samira Jaeger, Gokhan Ertaylan, David van Dijk, Ulf Leser, Peter Sloot

published 12 Oct 2010

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From Knockouts to Networks: Establishing Direct Cause-Effect Relationships through Graph Analysis

Andrea Pinna, Nicola Soranzo, Alberto de la Fuente

published 11 Oct 2010

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