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Network analysis

Loss of ‘Small-World’ Networks in Alzheimer's Disease: Graph Analysis of fMRI Resting-State Functional Connectivity

Ernesto J. Sanz-Arigita, Menno M. Schoonheim, [ ... ], Cornelis J. Stam

MicroRNA-Integrated and Network-Embedded Gene Selection with Diffusion Distance

Di Huang, Xiaobo Zhou, [ ... ], Stephen T. C. Wong

Comparing Brain Networks of Different Size and Connectivity Density Using Graph Theory

Bernadette C. M. van Wijk, Cornelis J. Stam, Andreas Daffertshofer

Yeast Biological Networks Unfold the Interplay of Antioxidants, Genome and Phenotype, and Reveal a Novel Regulator of the Oxidative Stress Response

Jose M. Otero, Manos A. Papadakis, [ ... ], Gianni Panagiotou

DREAM4: Combining Genetic and Dynamic Information to Identify Biological Networks and Dynamical Models

Alex Greenfield, Aviv Madar, Harry Ostrer, Richard Bonneau

Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks

Recep Colak, Flavia Moser, [ ... ], Martin Ester

Early Embryonic Gene Expression Profiling of Zebrafish Prion Protein (Prp2) Morphants

Rasoul Nourizadeh-Lillabadi, Jacob Seilø Torgersen, [ ... ], Mohasina Syed

Intertwining Threshold Settings, Biological Data and Database Knowledge to Optimize the Selection of Differentially Expressed Genes from Microarray

Paul Chuchana, Philippe Holzmuller, [ ... ], Bruno Bucheton

DEGAS: De Novo Discovery of Dysregulated Pathways in Human Diseases

Igor Ulitsky, Akshay Krishnamurthy, Richard M. Karp, Ron Shamir

Multiple Routes and Milestones in the Folding of HIV–1 Protease Monomer

Massimiliano Bonomi, Alessandro Barducci, Francesco L. Gervasio, Michele Parrinello

Dynamics of the Drosophila Circadian Clock: Theoretical Anti-Jitter Network and Controlled Chaos

Hassan M. Fathallah-Shaykh

Inference of Surface Membrane Factors of HIV-1 Infection through Functional Interaction Networks

Samira Jaeger, Gokhan Ertaylan, [ ... ], Peter Sloot

From Knockouts to Networks: Establishing Direct Cause-Effect Relationships through Graph Analysis

Andrea Pinna, Nicola Soranzo, Alberto de la Fuente

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