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Nanopore sequencing

Centriflaken: An automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples

Kranti Konganti, Julie A. Kase, Narjol Gonzalez-Escalona

published 23 Dec 2025

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Evaluation of nanopore sequencing for increasing accessibility of eDNA studies in biodiverse countries

Daniel Gygax, Sabina Ramirez, Moses Chibesa, Twakundine Simpamba, Michael Riffel, Tom Riffel, Amrita Srivathsan, Reindert Nijland, Lara Urban

published 16 Oct 2025

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cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads

Alexander J. Petri, Mai Thi-Huyen Nguyen, Anjali Rajwar, Erik Benson, Kristoffer Sahlin

published 24 Jul 2025

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A targeted approach for multiplex detection of respiratory viruses in cases with severe acute respiratory infections by nanopore sequencing

Arghavan Zebardast, Kaveh Sadeghi, Ahmad Nejati, Sevrin Zadheidar, Mohammad Hossein Najmi, Adel Abedi, Vahid Salimi, Mehdi Shabani, Jila Yavarian, Nazanin Zahra Shafiei Jandaghi, Talat Mokhtari Azad

published 25 Jun 2025

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The diagnostic accuracy of nanopore sequencing in Tuberculous Lymphadenitis: Systematic review and meta-analysis protocol

Liwei Yao, Caifang Bu, Lijun Xiang

published 10 Jun 2025

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High-performance protocol for ultra-short DNA sequencing using Oxford Nanopore Technology (ONT)

Lukas Žemaitis, Rūta Palepšienė, Simonas Juzėnas, Gediminas Alzbutas, Pierre-Yves Burgi, Thomas Heinis, Jérôme Charmet, Silvia Angeloni Suter, Martin Jost, Renaldas Raišutis, Friedrich Simmel, Ignas Galminas

published 29 Apr 2025

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Rapidly obtaining genome sequence of Severe Fever with Thrombocytopenia Syndrome virus directly from clinical serum specimen using long amplicon based nanopore sequencing workflow

Tingting Tian, Yanhan Wen, Liping Gao, Tiezhu Liu, Xiaoxia Huang, Chuan Li, Shanshan Du, Hao Li, Meijun Guo, Jiandong Li, Shiwen Wang, Dexin Li, Aqian Li, Mifang Liang

published 25 Apr 2025

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Amplified DNA heterogeneity assessment with Oxford Nanopore sequencing applied to cell free expression templates

Sepehr Hejazi, Afrin Ahsan, SeyedMohammad Kashani, Denis Tameiv, Nigel F. Reuel

published 03 Dec 2024

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The value of nanopore sequencing as a diagnostic tool in tuberculous meningitis: A protocol of systematic review and meta-analysis

Yanqin Shen, Yuyang Ling, Guocan Yu, Xiaoxia Zhang

published 18 Jul 2024

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Diagnostic accuracy of nanopore sequencing for the rapid diagnosis of pulmonary tuberculosis: A protocol for a systematic review and meta-analysis

Guocan Yu, Xudong Xu, Yanqin Shen, Bifei Fang

published 06 Jun 2024

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CRISPR-Cas9-guided amplification-free genomic diagnosis for familial hypercholesterolemia using nanopore sequencing

Sijia Xu, Hiroki Shiomi, Yugo Yamashita, Satoshi Koyama, Takahiro Horie, Osamu Baba, Masahiro Kimura, Yasuhiro Nakashima, Naoya Sowa, Koji Hasegawa, Ayako Suzuki, Yutaka Suzuki, Takeshi Kimura, Koh Ono

published 20 Mar 2024

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HaplotagLR: An efficient and configurable utility for haplotagging long reads

Monica J. Holmes, Babak Mahjour, Christopher P. Castro, Gregory A. Farnum, Adam G. Diehl, Alan P. Boyle

published 13 Mar 2024

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Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii

Frédéric Chaux, Nicolas Agier, Stephan Eberhard, Zhou Xu

published 08 Feb 2024

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