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Multiple alignment calculation

rfaRm: An R client-side interface to facilitate the analysis of the Rfam database of RNA families

Lara Sellés Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

published 15 Jan 2021

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Alignment-free method for functional annotation of amino acid substitutions: Application on epigenetic factors involved in hematologic malignancies

Branislava Gemović, Vladimir Perović, Radoslav Davidović, Tamara Drljača, Nevena Veljkovic

published 04 Jan 2021

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A workflow with R: Phylogenetic analyses and visualizations using mitochondrial cytochrome b gene sequences

Emine Toparslan, Kemal Karabag, Ugur Bilge

published 15 Dec 2020

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Mutational networks of escape from transmitted HIV-1 infection

Elma H. Akand, Stephen J. Maher, John M. Murray

published 07 Dec 2020

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The ITS region provides a reliable DNA barcode for identifying reishi/lingzhi (Ganoderma) from herbal supplements

Tess Gunnels, Matthew Creswell, Janis McFerrin, Justen B. Whittall

published 12 Nov 2020

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Mitochondrial genomes of stick insects (Phasmatodea) and phylogenetic considerations

Nan Song, Xinghao Li, Risong Na

published 06 Oct 2020

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Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

María P. Martín, Pablo P. Daniëls, David Erickson, John L. Spouge

published 19 Aug 2020

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Curated multiple sequence alignment for the Adenomatous Polyposis Coli (APC) gene and accuracy of in silico pathogenicity predictions

Alexander D. Karabachev, Dylan J. Martini, David J. Hermel, Dana Solcz, Marcy E. Richardson, Tina Pesaran, Indra Neil Sarkar, Marc S. Greenblatt

published 04 Aug 2020

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Effect of bovine leukemia virus (BLV) infection on bovine mammary epithelial cells RNA-seq transcriptome profile

Lucia Martinez Cuesta, Juan Pedro Liron, María Victoria Nieto Farias, Guillermina Laura Dolcini, Maria Carolina Ceriani

published 24 Jun 2020

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Sergentomyia schwetzi: Salivary gland transcriptome, proteome and enzymatic activities in two lineages adapted to different blood sources

Nikola Polanska, Aygul Ishemgulova, Vera Volfova, Pavel Flegontov, Jan Votypka, Vyacheslav Yurchenko, Petr Volf

published 24 Mar 2020

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Disease-relevant mutations alter amino acid co-evolution networks in the second nucleotide binding domain of CFTR

Gabrianne Ivey, Robert T. Youker

published 24 Jan 2020

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RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment

Amir H. Bayegan, Peter Clote

published 24 Jan 2020

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TranCEP: Predicting the substrate class of transmembrane transport proteins using compositional, evolutionary, and positional information

Munira Alballa, Faizah Aplop, Gregory Butler

published 14 Jan 2020

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