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Multiple alignment calculation

MC64-ClustalWP2: A Highly-Parallel Hybrid Strategy to Align Multiple Sequences in Many-Core Architectures

David Díaz, Francisco J. Esteban, [ ... ], Sergio Gálvez

Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners

Carlo Baldassi, Marco Zamparo, [ ... ], Andrea Pagnani

Where Taxonomy Based on Subtle Morphological Differences Is Perfectly Mirrored by Huge Genetic Distances: DNA Barcoding in Protura (Hexapoda)

Monika Carol Resch, Julia Shrubovych, [ ... ], Günther Pass

MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

Wan-Ping Lee, Michael P. Stromberg, [ ... ], Gabor T. Marth

Evolution and Structural Organization of the C Proteins of Paramyxovirinae

Michael K. Lo, Teit Max Søgaard, David G. Karlin

QuickProbs—A Fast Multiple Sequence Alignment Algorithm Designed for Graphics Processors

Adam Gudyś, Sebastian Deorowicz

A Deterministic Analysis of Genome Integrity during Neoplastic Growth in Drosophila

Cem Sievers, Federico Comoglio, [ ... ], Renato Paro

The Receptor for Advanced Glycation End-Products (RAGE) Is Only Present in Mammals, and Belongs to a Family of Cell Adhesion Molecules (CAMs)

Luca Sessa, Elena Gatti, [ ... ], Marco E. Bianchi

CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

Bioinformatics Analysis of Bacterial Annexins – Putative Ancestral Relatives of Eukaryotic Annexins

Praveen Kumar Kodavali, Małgorzata Dudkiewicz, Sławomir Pikuła, Krzysztof Pawłowski

Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests

Chioko Nagao, Nozomi Nagano, Kenji Mizuguchi

Multiple Co-Evolutionary Networks Are Supported by the Common Tertiary Scaffold of the LacI/GalR Proteins

Daniel J. Parente, Liskin Swint-Kruse

Generalized Baum-Welch Algorithm Based on the Similarity between Sequences

Vahid Rezaei, Hamid Pezeshk, Horacio Pérez-Sa'nchez

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