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Microbiome

Comparing the gut microbiome of obese, African American, older adults with and without mild cognitive impairment

Andrew McLeod, Beatriz Penalver Bernabe, Yinglin Xia, Jennifer Sanchez-Flack, Melissa Lamar, Linda Schiffer, Karla Castellanos, Giamila Fantuzzi, Pauline Maki, Marian Fitzgibbon, Lisa Tussing-Humphreys

published 24 Feb 2023

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Analysis of the core bacterial community associated with consumer-ready Eastern oysters (Crassostrea virginica)

Ian S. Hines, Justin Markov Madanick, Stephen A. Smith, David D. Kuhn, Ann M. Stevens

published 22 Feb 2023

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An optimized electrotransformation protocol for Lactobacillus jensenii

Elsa Fristot, Thomas Bessede, Miguel Camacho Rufino, Pauline Mayonove, Hung-Ju Chang, Ana Zuniga, Anne-Laure Michon, Sylvain Godreuil, Jérôme Bonnet, Guillaume Cambray

published 17 Feb 2023

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Reliability of species detection in 16S microbiome analysis: Comparison of five widely used pipelines and recommendations for a more standardized approach

Andreas Hiergeist, Jean Ruelle, Stefan Emler, André Gessner

published 16 Feb 2023

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Mimicking seasonal changes in light-dark cycle and ambient temperature modulates gut microbiome in mice under the same dietary regimen

Shoko Matsumoto, Liang Ren, Masayuki Iigo, Atsushi Murai, Takashi Yoshimura

published 15 Feb 2023

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Gallbladder microbiota in healthy dogs and dogs with mucocele formation

Jody L. Gookin, Ashley N. Hartley, Kathleen M. Aicher, Kyle G. Mathews, Rachel Cullen, John M. Cullen, Benjamin J. Callahan, Devorah M. Stowe, Gabriela S. Seiler, Megan E. Jacob, Jason W. Arnold, M. Andrea Azcarate-Peril, Stephen H. Stauffer

published 10 Feb 2023

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The virtual microbiome: A computational framework to evaluate microbiome analyses

Belén Serrano-Antón, Francisco Rodríguez-Ventura, Pere Colomer-Vidal, Riccardo Aiese Cigliano, Clemente F. Arias, Federica Bertocchini

published 08 Feb 2023

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Phylogeny analysis of whole protein-coding genes in metagenomic data detected an environmental gradient for the microbiota

Soichirou Satoh, Rei Tanaka, Makio Yokono, Daiji Endoh, Tetsuo Yabuki, Ayumi Tanaka

published 02 Feb 2023

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Hmong microbiome ANd Gout, Obesity, Vitamin C (HMANGO-C): A phase II clinical study protocol

Ya-Feng Wen, Kathleen A. Culhane-Pera, Shannon L. Pergament, Yeng Moua, Bai Vue, Toua Yang, Muaj Lo, Boguang Sun, Dan Knights, Robert J. Straka

published 01 Feb 2023

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Characterisation of human milk bacterial DNA profiles in a small cohort of Australian women in relation to infant and maternal factors

Azhar S. Sindi, Ali S. Cheema, Michelle L. Trevenen, Donna T. Geddes, Matthew S. Payne, Lisa F. Stinson

published 25 Jan 2023

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A first molecular characterization of the scorpion telson microbiota of Hadrurus arizonensis and Smeringurus mesaensis

Christopher Shimwell, Lauren Atkinson, Matthew R. Graham, Barbara Murdoch

published 17 Jan 2023

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Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

Katherine A. Maki, Brian Wolff, Leonardo Varuzza, Stefan J. Green, Jennifer J. Barb

published 13 Jan 2023

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Diversity and functional analysis of rumen and fecal microbial communities associated with dietary changes in crossbreed dairy cattle

Felix M. Kibegwa, Rawlynce C. Bett, Charles K. Gachuiri, Eunice Machuka, Francesca Stomeo, Fidalis D. Mujibi

published 13 Jan 2023

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