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Microbial taxonomy

Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data

Amanda H. Pendegraft, Boyi Guo, Nengjun Yi

Archaeal community variation in the Qinhuangdao coastal aquaculture zone revealed by high-throughput sequencing

Shuping Wang, Xin Zheng, [ ... ], Zhenguang Yan

Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment

David A. Coil, Guillaume Jospin, [ ... ], Ciaran O’Flynn

Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing

Kanishka Indiwari Kamathewatta, Rhys Nathan Bushell, [ ... ], Marc Serge Marenda

Does MHC heterozygosity influence microbiota form and function?

M. A. Wadud Khan, W. Zac Stephens, [ ... ], Jason Lee Kubinak

Characteristics of the tree shrew gut virome

Linxia Chen, Wenpeng Gu, [ ... ], Jiejie Dai

Characterization of the intestinal microbiota of the sea cucumber Holothuria glaberrima

María Pagán-Jiménez, Jean F. Ruiz-Calderón, María G. Dominguez-Bello, José E. García-Arrarás

Fecal microbiota changes associated with dehorning and castration stress primarily affects light-weight dairy calves

Raies A. Mir, Michael D. Kleinhenz, [ ... ], Indira T. Kudva

Screening human cell lines for viral infections applying RNA-Seq data analysis

Cord C. Uphoff, Claudia Pommerenke, Sabine A. Denkmann, Hans G. Drexler

Delayed differentiation of vaginal and uterine microbiomes in dairy cows developing postpartum endometritis

Raúl Miranda-CasoLuengo, Junnan Lu, [ ... ], Wim G. Meijer

The taxonomy of an Australian nodavirus isolated from mosquitoes

David Warrilow, Bixing Huang, [ ... ], Jody Hobson-Peters

Microbial community composition and diversity in the Indian Ocean deep sea REY-rich muds

Shuyan Wang, Miao Yu, [ ... ], Hao Chen

Burn injury alters the intestinal microbiome’s taxonomic composition and functional gene expression

Nadine Beckmann, Amanda M. Pugh, Charles C. Caldwell

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