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Microbial taxonomy

Prokaryotic and eukaryotic microbiomes associated with blooms of the ichthyotoxic dinoflagellate Cochlodinium (Margalefidinium) polykrikoides in New York, USA, estuaries

Theresa K. Hattenrath-Lehmann, Jennifer Jankowiak, Florian Koch, Christopher J. Gobler

Framework for rational donor selection in fecal microbiota transplant clinical trials

Claire Duvallet, Caroline Zellmer, [ ... ], Eric J. Alm

Suppression treatment differentially influences the microbial community and the occurrence of broad host range plasmids in the rhizosphere of the model cover crop Avena sativa L.

Marco Allegrini, Elena del V. Gomez, Kornelia Smalla, María Celina Zabaloy

Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, [ ... ], Dirk Repsilber

Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data

Amanda H. Pendegraft, Boyi Guo, Nengjun Yi

Archaeal community variation in the Qinhuangdao coastal aquaculture zone revealed by high-throughput sequencing

Shuping Wang, Xin Zheng, [ ... ], Zhenguang Yan

Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment

David A. Coil, Guillaume Jospin, [ ... ], Ciaran O’Flynn

Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing

Kanishka Indiwari Kamathewatta, Rhys Nathan Bushell, [ ... ], Marc Serge Marenda

Does MHC heterozygosity influence microbiota form and function?

M. A. Wadud Khan, W. Zac Stephens, [ ... ], Jason Lee Kubinak

Characteristics of the tree shrew gut virome

Linxia Chen, Wenpeng Gu, [ ... ], Jiejie Dai

Characterization of the intestinal microbiota of the sea cucumber Holothuria glaberrima

María Pagán-Jiménez, Jean F. Ruiz-Calderón, María G. Dominguez-Bello, José E. García-Arrarás

Fecal microbiota changes associated with dehorning and castration stress primarily affects light-weight dairy calves

Raies A. Mir, Michael D. Kleinhenz, [ ... ], Indira T. Kudva

Screening human cell lines for viral infections applying RNA-Seq data analysis

Cord C. Uphoff, Claudia Pommerenke, Sabine A. Denkmann, Hans G. Drexler

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