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Microbial taxonomy

Quantification of diversity sampling bias resulting from rice root bacterial isolation on popular and nitrogen-free culture media using 16S amplicon barcoding

Moussa Sondo, Issa Wonni, [ ... ], Lionel Moulin

Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach

Sandra Dérozier, Robert Bossy, [ ... ], Claire Nédellec

Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

Katherine A. Maki, Brian Wolff, [ ... ], Jennifer J. Barb

Chronic clinical signs of upper respiratory tract disease associate with gut and respiratory microbiomes in a cohort of domestic felines

Holly Kristin Arnold, Rhea Hanselmann, [ ... ], Brianna R. Beechler

A Metabologenomic approach reveals alterations in the gut microbiota of a mouse model of Alzheimer’s disease

Francesco Favero, Elettra Barberis, [ ... ], Marco Corazzari

MiCloud: A unified web platform for comprehensive microbiome data analysis

Won Gu, Jeongsup Moon, [ ... ], Hyunwook Koh

A taxonomically representative strain collection to explore xenobiotic and secondary metabolism in bacteria

Evanthia Kontomina, Vasiliki Garefalaki, [ ... ], Sotiria Boukouvala

Adaptation of the infant gut microbiome during the complementary feeding transition

Starin McKeen, Nicole C. Roy, [ ... ], Warren C. McNabb

Vaginal microbiome of women with adenomyosis: A case-control study

Jitsupa Kunaseth, Wanwisa Waiyaput, [ ... ], Areepan Sophonsritsuk

Development of an efficient antimicrobial susceptibility testing method with species identification by Nanopore sequencing of 16S rRNA amplicons

Yuto Kawai, Naoya Ozawa, [ ... ], Kazuki Mikata

NGS read classification using AI

Benjamin Voigt, Oliver Fischer, [ ... ], Piotr Wojciech Dabrowski

Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species

Arina L. Maltseva, Marina A. Varfolomeeva, [ ... ], Andrei I. Granovitch

Composition of nasal bacterial community and its seasonal variation in health care workers stationed in a clinical research laboratory

Nazima Habibi, Abu Salim Mustafa, Mohd Wasif Khan

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