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Microbial taxonomy

Investigating the relationship between microbial network features of giant kelp “seedbank” cultures and subsequent farm performance

Melisa G. Osborne, Ariel Levi Simons, [ ... ], Sergey V. Nuzhdin

Speeding genomic island discovery through systematic design of reference database composition

Steven L. Yu, Catherine M. Mageeney, [ ... ], Kelly P. Williams

The salivary microbiota of patients with acute lower respiratory tract infection–A multicenter cohort study

Matthew B. Rogers, Ashley Harner, [ ... ], David T. Huang

Diversity and plant growth promoting ability of rice root-associated bacteria in Burkina-Faso and cross-comparison with metabarcoding data

Moussa Sondo, Issa Wonni, [ ... ], Agnieszka Klonowska

Diversity and spatiotemporal variations in bacterial and archaeal communities within Kuwaiti territorial waters of the Northwest Arabian Gulf

Saja A. Fakhraldeen, Sakinah Al-Haddad, [ ... ], Walid M. Al-Zakri

Integrating current analyses of the breast cancer microbiome

Sidra Sohail, Michael B. Burns

MT-MAG: Accurate and interpretable machine learning for complete or partial taxonomic assignments of metagenome-assembled genomes

Wanxin Li, Lila Kari, Yaoliang Yu, Laura A. Hug

The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection

Ruijie Xu, Sreekumari Rajeev, Liliana C. M. Salvador

Quantification of diversity sampling bias resulting from rice root bacterial isolation on popular and nitrogen-free culture media using 16S amplicon barcoding

Moussa Sondo, Issa Wonni, [ ... ], Lionel Moulin

Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach

Sandra Dérozier, Robert Bossy, [ ... ], Claire Nédellec

Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

Katherine A. Maki, Brian Wolff, [ ... ], Jennifer J. Barb

Chronic clinical signs of upper respiratory tract disease associate with gut and respiratory microbiomes in a cohort of domestic felines

Holly Kristin Arnold, Rhea Hanselmann, [ ... ], Brianna R. Beechler

Effects of different amoxicillin treatment durations on microbiome diversity and composition in the gut

Katrine Lekang, Sudhanshu Shekhar, [ ... ], Hanne C. Winther-Larsen

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