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Microbial taxonomy

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

Fernando Dini Andreote, Diego Javier Jiménez, [ ... ], Itamar Soares de Melo

The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences

Kaustubh Raosaheb Patil, Linus Roune, Alice Carolyn McHardy

Analyses of the Microbial Diversity across the Human Microbiome

Kelvin Li, Monika Bihan, Shibu Yooseph, Barbara A. Methé

A Case Study for Large-Scale Human Microbiome Analysis Using JCVI’s Metagenomics Reports (METAREP)

Johannes Goll, Mathangi Thiagarajan, [ ... ], Barbara A. Methé

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability

James R. White, Jignasa Patel, [ ... ], Jose V. Lopez

Bacterial and Phytoplankton Responses to Nutrient Amendments in a Boreal Lake Differ According to Season and to Taxonomic Resolution

Sari Peura, Alexander Eiler, [ ... ], Roger I. Jones

A Rickettsiella Bacterium from the Hard Tick, Ixodes woodi: Molecular Taxonomy Combining Multilocus Sequence Typing (MLST) with Significance Testing

Andreas Leclerque, Regina G. Kleespies

Phylogenetic Analysis of a Spontaneous Cocoa Bean Fermentation Metagenome Reveals New Insights into Its Bacterial and Fungal Community Diversity

Koen Illeghems, Luc De Vuyst, Zoi Papalexandratou, Stefan Weckx

Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

Nicholas A. Bokulich, C. M. Lucy Joseph, [ ... ], David A. Mills

Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin

Vineet K. Sharma, Naveen Kumar, Tulika Prakash, Todd D. Taylor

Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, [ ... ], Hong-Wei Zhou

Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

Microbial Biogeography of Public Restroom Surfaces

Gilberto E. Flores, Scott T. Bates, [ ... ], Noah Fierer

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