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Microbial taxonomy

Bacterial and Phytoplankton Responses to Nutrient Amendments in a Boreal Lake Differ According to Season and to Taxonomic Resolution

Sari Peura, Alexander Eiler, [ ... ], Roger I. Jones

A Rickettsiella Bacterium from the Hard Tick, Ixodes woodi: Molecular Taxonomy Combining Multilocus Sequence Typing (MLST) with Significance Testing

Andreas Leclerque, Regina G. Kleespies

Phylogenetic Analysis of a Spontaneous Cocoa Bean Fermentation Metagenome Reveals New Insights into Its Bacterial and Fungal Community Diversity

Koen Illeghems, Luc De Vuyst, Zoi Papalexandratou, Stefan Weckx

Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

Nicholas A. Bokulich, C. M. Lucy Joseph, [ ... ], David A. Mills

Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin

Vineet K. Sharma, Naveen Kumar, Tulika Prakash, Todd D. Taylor

Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, [ ... ], Hong-Wei Zhou

Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

Microbial Biogeography of Public Restroom Surfaces

Gilberto E. Flores, Scott T. Bates, [ ... ], Noah Fierer

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

André M. Comeau, William K. W. Li, [ ... ], Connie Lovejoy

Substrate Type Determines Metagenomic Profiles from Diverse Chemical Habitats

Thomas C. Jeffries, Justin R. Seymour, [ ... ], James G. Mitchell

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

Lucie Zinger, Linda A. Amaral-Zettler, [ ... ], Alban Ramette

The Phylogenetic Diversity of Metagenomes

Steven W. Kembel, Jonathan A. Eisen, Katherine S. Pollard, Jessica L. Green

Culture Enriched Molecular Profiling of the Cystic Fibrosis Airway Microbiome

Christopher D. Sibley, Margot E. Grinwis, [ ... ], Michael G. Surette

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