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Microbial taxonomy

Analyses of the Microbial Diversity across the Human Microbiome

Kelvin Li, Monika Bihan, Shibu Yooseph, Barbara A. Methé

A Case Study for Large-Scale Human Microbiome Analysis Using JCVI’s Metagenomics Reports (METAREP)

Johannes Goll, Mathangi Thiagarajan, [ ... ], Barbara A. Methé

Pyrosequencing of Bacterial Symbionts within Axinella corrugata Sponges: Diversity and Seasonal Variability

James R. White, Jignasa Patel, [ ... ], Jose V. Lopez

Bacterial and Phytoplankton Responses to Nutrient Amendments in a Boreal Lake Differ According to Season and to Taxonomic Resolution

Sari Peura, Alexander Eiler, [ ... ], Roger I. Jones

A Rickettsiella Bacterium from the Hard Tick, Ixodes woodi: Molecular Taxonomy Combining Multilocus Sequence Typing (MLST) with Significance Testing

Andreas Leclerque, Regina G. Kleespies

Phylogenetic Analysis of a Spontaneous Cocoa Bean Fermentation Metagenome Reveals New Insights into Its Bacterial and Fungal Community Diversity

Koen Illeghems, Luc De Vuyst, Zoi Papalexandratou, Stefan Weckx

Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

Nicholas A. Bokulich, C. M. Lucy Joseph, [ ... ], David A. Mills

Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin

Vineet K. Sharma, Naveen Kumar, Tulika Prakash, Todd D. Taylor

Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, [ ... ], Hong-Wei Zhou

Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

Microbial Biogeography of Public Restroom Surfaces

Gilberto E. Flores, Scott T. Bates, [ ... ], Noah Fierer

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

André M. Comeau, William K. W. Li, [ ... ], Connie Lovejoy

Substrate Type Determines Metagenomic Profiles from Diverse Chemical Habitats

Thomas C. Jeffries, Justin R. Seymour, [ ... ], James G. Mitchell

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