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Microbial genetics

A trainable language model with potential to modulate translation rates in non-model organisms by generating upstream untranslated region sequence libraries

Alexander D. Duggan, Matthew P. Newman, David R. McMillen

published 17 Sep 2026

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Codon bias variation in Staphylococcus aureus

Kathleen O’Connor, Benjamin D. Mallinger, Nicholas A. Bedard, Robin Patel

published 09 Sep 2026

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Comparative prevalence of the mercury resistance gene merA in human feces, food, and environmental water from Japan, Vietnam, and Ghana

Yen Hai Le, Judith Dzifa Azumah, Diep Thi Khong, Thang Nam Nguyen, Cornelia Appiah-Kwarteng, Kazuaki Matsui, Mayumi Yamamoto, Kaori Tanaka, Yoshimasa Yamamoto

published 08 Sep 2026

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Development of a rapid comQ-targeted quantitative polymerase chain reaction assay for specific identification and quantification of Bacillus subtilis subsp. natto

Mayu Takizawa, Daisuke Kyoui, Rika Horiguchi, Ayano Sakurai, Taketo Kawarai, Naoki Narisawa

published 03 Aug 2026

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In silico antimicrobial resistance profiling of 1,240 Stenotrophomonas maltophilia genomes: AMR gene prevalence, temporal evolution, and ST-specific associations

Laith B. Alhusseini, Firas Nabeeh Jaafar, Ahmed R. Alsharmani, Ebrahim Kouhsari, Mohammad Sholeh

published 09 Jul 2026

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An integrative multi-omics approach points to membrane composition as a key factor in E. coli persistence

Silvia J. Cañas-Duarte, Lei Sun, María Isabel Pérez-López, Cornelia Herrfurth, Lina M. Contreras, Ivo Feussner, Chad Leidy, Johan Paulsson, Diego M. Riaño-Pachón, Juan M. Pedraza, Silvia Restrepo

published 29 Jun 2026

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Genomic characterization of multidrug-resistant Escherichia coli isolated from gills of Labeo rohita: Insight into resistome, virulence and pathogenicity

Amit Kumar, Rahul Singh, Asma Masood, Dhouha Choukaier, Abhinav Kumar, Ankit Dilipkumar Oza, Denekew Alemayehu Alamneh

published 25 Jun 2026

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Phenotypic and molecular characterization of K64 putative hypervirulent carbapenem-resistant Klebsiella pneumoniae

Chunhong Shao, Jian Bao, Xinying Wang, Yan Jin, Ren Ren, Wei Wang, Meijie Jiang

published 25 Jun 2026

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Uncovering core stemness biomarkers in HBV-HCC through integrated multi-omics

Hanning Xu, Huan Li, Ling Hu, Xiaomei Wang

published 14 May 2026

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Streptococcus didelphis infection in free-ranging white-eared opossum (Didelphis albiventris) and Brazilian common opossum (Didelphis aurita): pathology, microbiologic, and genomic characterization

Daniel Oliveira dos Santos, Yasmin Gonçalves de Castro, André Duarte Vieira, Bruna Hermine de Campos, Lucas dos Reis de Souza, Nayara Ferreira de Paula, Vasco Azevedo, Bertram Brenig, Caio de Castro Cunha Figueiredo, Letícia Neves Ribeiro, Janaína Ribeiro Duarte, Vinícius Henrique Barbosa Amaral, Carlyle Mendes Coelho, Herlandes Penha Tinoco, Marcelo Pires Nogueira Carvalho, Ayisa Rodrigues de Oliveira, Rodrigo Otávio Silveira Silva, Renato Lima Santos

published 30 Apr 2026

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Direct LAMP for on-site rapid detection of Vibrio parahaemolyticus in shrimp (Litopenaeus vannamei) aquaculture water

Xiaodan Pu, Feng Lu, Qianqian Yang, Zhenyu Han, Xueting Zhu, Jianlei Chen, Dahai Zhang, Xuzhi Zhang

published 29 Apr 2026

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Transcriptomic study of WSSV infection in Litopenaeus vannamei lymphoid organ via single nuclei RNA sequencing

Alexandra Florea, Nick Wade, Sarah J. Salisbury, James Furniss, Clémence Fraslin, Ambre Chapuis, Kallen Sullivan, Robert Stewart, Diego Robledo, Tim P. Bean

published 27 Apr 2026

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Identification of an optimal exogenous gene insertion site (P–M) and establishment of a reverse genetics system for aMPV/A

Yu Guo, Ting Xue, Bingqing Lu, Jiqing Zheng, Yirong Wang, Xueqiao Xie, Huiting Wang, Furui Cao, Yijun Zhang, Jianhua Wang

published 20 Apr 2026

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