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Microbial genetics

Exploring the host response in infected lung organoids using NanoString technology: A statistical analysis of gene expression data

Mostafa Rezapour, Stephen J. Walker, David A. Ornelles, Muhammad Khalid Khan Niazi, Patrick M. McNutt, Anthony Atala, Metin Nafi Gurcan

published 26 Nov 2024

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Increased QPCT gene expression by the hepatitis B virus promotes HBV replication

Conghui Zhang, Qingfeng Ma, Wei Wang, Hui Song, Xue Wang, Fengxia Xu, Chengliang Zhu, Xinghui Liu

published 12 Nov 2024

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Tracking inflammation resolution signatures in lungs after SARS-CoV-2 omicron BA.1 infection of K18-hACE2 mice

Agnes Carolin, Kexin Yan, Cameron R. Bishop, Bing Tang, Wilson Nguyen, Daniel J. Rawle, Andreas Suhrbier

published 12 Nov 2024

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Transcriptomic analyses of host-virus interactions during in vitro infection with wild-type and glycoprotein g-deficient (ΔgG) strains of ILTV in primary and continuous cell cultures

Gayathri Gopakumar, Andrés Diaz-Méndez, Mauricio J. C. Coppo, Carol A. Hartley, Joanne M. Devlin

published 11 Oct 2024

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Prediction of antimicrobial resistance of Klebsiella pneumoniae from genomic data through machine learning

Chiara Condorelli, Emanuele Nicitra, Nicolò Musso, Dafne Bongiorno, Stefania Stefani, Lucia Valentina Gambuzza, Vincenza Carchiolo, Mattia Frasca

published 18 Sep 2024

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Epidemiology and genetic characterization of influenza viruses circulating in Bhutan in 2022

Kunzang Dorji, Chonticha Klungthong, Tshering Dorji, Tandin Wangchuk, Pema Yuden, Tshering Pelki, Tara Devi Ghishing, Govinda Gyemiry, Sonam Gyeltshen, Piyawan Chinnawirotpisan, Wudtichai Manasatienkij, Sonam Wangchuk, Aaron Farmer

published 17 Sep 2024

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RNA editing regulates host immune response and T cell homeostasis in SARS-CoV-2 infection

Molly Huang, Adam Mark, Jessica Pham, Karina Vera, Amanda M. Saravia-Butler, Afshin Beheshti, Qingfei Jiang, Kathleen M. Fisch

published 23 Aug 2024

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Whole genome-based reclassification of several species of the genus Microbispora

Noureddine Bouras, Ricardo A. R. Machado

published 22 Aug 2024

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A comparative genomic study of a hydrocarbon-degrading marine bacterial consortium

Jorge Rojas-Vargas, Eria A. Rebollar, Alejandro Sanchez-Flores, Liliana Pardo-López

published 08 Aug 2024

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USP26 suppresses type I interferon signaling by targeting TRAF3 for deubiquitination

Cheng-Lan Sheng, Bang-Dong Jiang, Chun-Qiu Zhang, Jin-Hua Huang, Zi Wang, Chao Xu

published 26 Jul 2024

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Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia

Basha Chekesa, Harinder Singh, Norberto Gonzalez-Juarbe, Sanjay Vashee, Rosana Wiscovitch-Russo, Christopher L. Dupont, Musse Girma, Oudessa Kerro, Balako Gumi, Gobena Ameni

published 25 Jul 2024

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Comparative genomics of Tn6411 transposons carrying the bla_IMP-1 gene in Pseudomonas aeruginosa

Lin Zheng, Zixian Wang, Jingyi Guo, Jiayao Guan, Gejin Lu, Jie Jing, Shiwen Sun, Yang Sun, Xue Ji, Bowen Jiang, Yongjie Wang, Chuanfang Zhao, Lingwei Zhu, Xuejun Guo

published 09 Jul 2024

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A cell competition system with one gene expression from a single-copy gene in one cell

Yoshinori Hasegawa, Megumi Nakano, Tsutomu Hosouchi, Takashi Watanabe, Izumi Yamaguchi, Manabu Nakayama, Osamu Ohara

published 05 Jul 2024

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