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Microbial genetics

Effect of disinfection agents and quantification of potentially viable Leptospira in fresh water samples using a highly sensitive integrity-qPCR assay

Elise Richard, Pascale Bourhy, Mathieu Picardeau, Laurent Moulin, Sébastien Wurtzer

published 26 May 2021

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Genomic GC content drifts downward in most bacterial genomes

Bert Ely

published 26 May 2021

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Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs

Adrián López-García, Rita Benítez, Yolanda Núñez, Emilio Gómez-Izquierdo, Eduardo de Mercado, Juan M. García-Casco, Óscar González-Recio, Clemente López-Bote, Jordi Estellé, Cristina Óvilo

published 20 May 2021

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Pseudoprevotella muciniphila gen. nov., sp. nov., a mucin-degrading bacterium attached to the bovine rumen epithelium

Sang Weon Na, Byung Hee Chun, Seok-Hyeon Beak, Shehzad Abid Khan, Md. Najmul Haque, Jae Sung Lee, Che Ok Jeon, Sang-Suk Lee, Myunggi Baik

published 20 May 2021

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Pool testing on random and natural clusters of individuals: Optimisation of SARS-CoV-2 surveillance in the presence of low viral load samples

Michela Baccini, Emilia Rocco, Irene Paganini, Alessandra Mattei, Cristina Sani, Giulia Vannucci, Simonetta Bisanzi, Elena Burroni, Marco Peluso, Armelle Munnia, Filippo Cellai, Giampaolo Pompeo, Laura Micio, Jessica Viti, Fabrizia Mealli, Francesca Maria Carozzi

published 18 May 2021

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Genome-wide identification of 5-methylcytosine sites in bacterial genomes by high-throughput sequencing of MspJI restriction fragments

Brian P. Anton, Alexey Fomenkov, Victoria Wu, Richard J. Roberts

published 11 May 2021

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Distribution of Merlin in eukaryotes and first report of DNA transposons in kinetoplastid protists

Ana Luisa Kalb Lopes, Eva Kriegová, Julius Lukeš, Marco Aurélio Krieger, Adriana Ludwig

published 06 May 2021

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Development of multiplex real-time RT-PCR assay for the detection of SARS-CoV-2

Huseyin Tombuloglu, Hussein Sabit, Ebtesam Al-Suhaimi, Reem Al Jindan, Khaled R. Alkharsah

published 29 Apr 2021

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Improved transformation efficiency of group A Streptococcus by inactivation of a type I restriction modification system

Meredith B. Finn, Kathryn M. Ramsey, Hunter J. Tolliver, Simon L. Dove, Michael R. Wessels

published 29 Apr 2021

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Comprehensive at-arrival transcriptomic analysis of post-weaned beef cattle uncovers type I interferon and antiviral mechanisms associated with bovine respiratory disease mortality

Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, Andy D. Perkins, Bindu Nanduri, David R. Smith, Brandi B. Karisch, William B. Epperson, John R. Blanton

published 26 Apr 2021

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Supervised extraction of near-complete genomes from metagenomic samples: A new service in PATRIC

Bruce Parrello, Rory Butler, Philippe Chlenski, Gordon D. Pusch, Ross Overbeek

published 15 Apr 2021

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Evaluating domestication and ploidy effects on the assembly of the wheat bacterial microbiome

Heidi M. L. Wipf, Devin Coleman-Derr

published 18 Mar 2021

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Machine learning predicts and provides insights into milk acidification rates of Lactococcus lactis

Signe Tang Karlsen, Tammi Camilla Vesth, Gunnar Oregaard, Vera Kuzina Poulsen, Ole Lund, Gemma Henderson, Jacob Bælum

published 15 Mar 2021

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