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Microbial genetics

Genome insights from the identification of a novel Pandoraea sputorum isolate and its characteristics

Rui-Fang Gao, Ying Wang, Ying Wang, Zhi-Wen Wang, Gui-Ming Zhang

published 05 Aug 2022

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Measuring quality of DNA sequence data via degradation

Alan F. Karr, Jason Hauzel, Adam A. Porter, Marcel Schaefer

published 03 Aug 2022

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Atypical integrative element with strand-biased circularization activity assists interspecies antimicrobial resistance gene transfer from Vibrio alfacsensis

Lisa Nonaka, Michiaki Masuda, Hirokazu Yano

published 02 Aug 2022

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The dynamic network of IS30 transposition pathways

Ferenc Olasz, Mónika Szabó, Alexandra Veress, Márton Bibó, János Kiss

published 28 Jul 2022

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A taxonomically representative strain collection to explore xenobiotic and secondary metabolism in bacteria

Evanthia Kontomina, Vasiliki Garefalaki, Konstantina C. Fylaktakidou, Dorothea Evmorfidou, Athina Eleftheraki, Marina Avramidou, Karen Udoh, Maria Panopoulou, Tamás Felföldi, Károly Márialigeti, Giannoulis Fakis, Sotiria Boukouvala

published 14 Jul 2022

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Calcitriol decreases HIV-1 transfer in vitro from monocyte-derived dendritic cells to CD4 + T cells, and downregulates the expression of DC-SIGN and SIGLEC-1

Natalia Alvarez, Sandra M. Gonzalez, Juan C. Hernandez, Maria T. Rugeles, Wbeimar Aguilar-Jimenez

published 08 Jul 2022

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High throughput SARS-CoV-2 variant analysis using molecular barcodes coupled with next generation sequencing

Lyora A. Cohen-Aharonov, Annie Rebibo-Sabbah, Adar Yaacov, Roy Z. Granit, Merav Strauss, Raul Colodner, Ori Cheshin, Shai Rosenberg, Ronen Eavri

published 21 Jun 2022

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MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

published 20 May 2022

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High quality genome annotation and expression visualisation of a mupirocin-producing bacterium

Anthony S. Haines, Steve G. Kendrew, Nicola Crowhurst, Elton R. Stephens, Jack Connolly, Joanne Hothersall, Claire E. Miller, Andrew J. Collis, Benjamin D. Huckle, Christopher M. Thomas

published 05 May 2022

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Isolation, identification, and whole-genome sequencing of high-yield protease bacteria from Daqu of ZhangGong Laojiu

Yanbo Liu, Junying Fu, Linlin Wang, Zhijun Zhao, Huihui Wang, Suna Han, Xiyu Sun, Chunmei Pan

published 26 Apr 2022

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Purification and characterization of antifungal lipopeptide produced by Bacillus velezensis isolated from raw honey

Zirui Ray Xiong, Mario Cobo, Randy M. Whittal, Abigail B. Snyder, Randy W. Worobo

published 06 Apr 2022

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Copy number variation of two begomovirus acquired and inoculated by different cryptic species of whitefly, Bemisia tabaci in Okra

Mritunjoy Barman, Snigdha Samanta, Swati Chakraborty, Arunava Samanta, Jayanta Tarafdar

published 30 Mar 2022

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An atlas of robust microbiome associations with phenotypic traits based on large-scale cohorts from two continents

Daphna Rothschild, Sigal Leviatan, Ariel Hanemann, Yossi Cohen, Omer Weissbrod, Eran Segal

published 24 Mar 2022

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